Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20262
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 84 1e-16
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical p... 29 3.8
DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein. 29 3.8
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.8
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.8
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.0
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 28 6.6
U12964-10|AAK93849.2| 140|Caenorhabditis elegans Hypothetical p... 28 8.8
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 83.8 bits (198), Expect = 1e-16
Identities = 33/52 (63%), Positives = 44/52 (84%)
Frame = +2
Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
PY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED
Sbjct: 134 PYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/56 (55%), Positives = 45/56 (80%)
Frame = +1
Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 420
+RAE+YV+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K
Sbjct: 48 KRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 414 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAD 509
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI +
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIE 133
Score = 36.7 bits (81), Expect = 0.019
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 664 LIHEIFTVGEKFKYASNFLWP---SN*TIHWWLRKKPFI 771
L HEI TVG FK A+NFLWP +N T W + F+
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFV 224
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 233 KKKREIFRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 412
KK+R++ R SR ASR +K K A +T P +PN + S S S ++ +
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80
Query: 413 P*SSATV*TAP 445
S + + P
Sbjct: 81 RSSQVKIRSVP 91
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 342 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 476
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 220 FFCHQEEEGNLQRAEQYVK 276
+FCH+ E NLQR Q VK
Sbjct: 120 YFCHESEHENLQRLAQQVK 138
>Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 220 FFCHQEEEGNLQRAEQYVK 276
+FCH+ E NLQR Q VK
Sbjct: 120 YFCHESEHENLQRLAQQVK 138
>DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 220 FFCHQEEEGNLQRAEQYVK 276
+FCH+ E NLQR Q VK
Sbjct: 120 YFCHESEHENLQRLAQQVK 138
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 342 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 476
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 342 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 476
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 333 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 455
+Q++R G Q+GI PW P F++V R L+ R ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 621 LRRGSINTTLSVLRTHP*DLHCWRKVQVRE*FPVAFKLNNPLVV 752
L GS+ + +RT D WR +VRE F + FK + L++
Sbjct: 288 LDEGSLEMQMKNVRTGECDKLAWRGAEVREHFRMLFKNDGKLLL 331
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 621 LRRGSINTTLSVLRTHP*DLHCWRKVQVRE*FPVAFKLNNPLVV 752
L GS+ + +RT D WR +VRE F + FK + L++
Sbjct: 288 LDEGSLEMQMKNVRTGECDKLAWRGAEVREHFRMLFKNDGKLLL 331
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 621 LRRGSINTTLSVLRTHP*DLHCWRKVQVRE*FPVAFKLNNPLVV 752
L GS+ + +RT D WR +VRE F + FK + L++
Sbjct: 288 LDEGSLEMQMKNVRTGECDKLAWRGAEVREHFRMLFKNDGKLLL 331
>U12964-10|AAK93849.2| 140|Caenorhabditis elegans Hypothetical
protein F26F4.9a protein.
Length = 140
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 232 QEEEGNLQRAEQYVKEYRIKERDEIRLARQARNR 333
+EEE L +++ ++ + +E D++RLARQ + R
Sbjct: 44 REEERRLIEQKKFDRQVQDREADKMRLARQKQQR 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,536
Number of Sequences: 27780
Number of extensions: 362583
Number of successful extensions: 891
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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