Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20262
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)              83   2e-16
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)              83   2e-16
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...    82   4e-16
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...    82   4e-16
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...    82   4e-16
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)              81   6e-16
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    65   6e-11
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    29   3.5  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 137 PYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 188



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    
Sbjct: 51  KRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQL 110

Query: 433 L 435
           L
Sbjct: 111 L 111



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKATVNMLR
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLR 133



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI TVG  FK A+NFLWP
Sbjct: 189 LIHEIMTVGPHFKEANNFLWP 209


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 132 PYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 183



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    
Sbjct: 46  KRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQL 105

Query: 433 L 435
           L
Sbjct: 106 L 106



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKATVNMLR
Sbjct: 98  KTKKILQLLRLRQIFNGVFLKVNKATVNMLR 128



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI TVG  FK A+NFLWP
Sbjct: 184 LIHEIMTVGPHFKEANNFLWP 204


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 35/52 (67%), Positives = 43/52 (82%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +GYPNLKSV+EL+YKRGF KL+ QR  +T NSIV++ L KH IICVED
Sbjct: 134 PYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = +1

Query: 256 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 435
           RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    L
Sbjct: 49  RAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI TVG  FK A+NFLWP
Sbjct: 186 LIHEIMTVGPHFKEANNFLWP 206


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 35/52 (67%), Positives = 43/52 (82%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +GYPNLKSV+EL+YKRGF KL+ QR  +T NSIV++ L KH IICVED
Sbjct: 134 PYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = +1

Query: 256 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 435
           RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    L
Sbjct: 49  RAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI TVG  FK A+NFLWP
Sbjct: 186 LIHEIMTVGPHFKEANNFLWP 206


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 35/52 (67%), Positives = 43/52 (82%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +GYPNLKSV+EL+YKRGF KL+ QR  +T NSIV++ L KH IICVED
Sbjct: 134 PYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = +1

Query: 256 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 435
           RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    L
Sbjct: 49  RAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLR 130



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI TVG  FK A+NFLWP
Sbjct: 186 LIHEIMTVGPHFKEANNFLWP 206


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC ED
Sbjct: 132 PYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTED 183



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAEQY KEY  KE++ I L R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K    
Sbjct: 46  KRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQL 105

Query: 433 LDCAK-*TMVCLYV*IRLL*ICYVSPTLHCLGIPQLKECP*VSIQTWIRQAEWTTYTNHF 609
           L   +    V L V    + +          G P LK    +  +    +          
Sbjct: 106 LRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIA-LT 164

Query: 610 QQHC*EEAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWP 726
                E+A      +C   LIHEI TVG  FK A+NFLWP
Sbjct: 165 DNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWP 204



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
           + +K+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 98  KTKKILQLLRLRQIFNGVFLKVNKATMNMLR 128


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 24/53 (45%), Positives = 40/53 (75%)
 Frame = +2

Query: 506 RPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           +PY+ +GYPN KSV++L+YK+G   + G  +P+T N+I+E+ L +H I+ +ED
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIED 187



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/68 (32%), Positives = 42/68 (61%)
 Frame = +1

Query: 232 QEEEGNLQRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 411
           +++  +++R E +V E+R KE D IR+ ++ +   +   P ++ L F+IRI+G N + PK
Sbjct: 43  KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102

Query: 412 SVKFCNCL 435
           + +  N L
Sbjct: 103 TKRILNNL 110


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 257 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 412
           G + T R+  +R  + SD   K+  V+ T   GK   HLS E  VS  F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,183
Number of Sequences: 28952
Number of extensions: 341191
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)