Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20258
(349 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary... 102 2e-21
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary... 89 2e-17
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula... 75 3e-13
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ... 74 6e-13
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola... 69 3e-11
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ... 63 1e-09
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos... 63 1e-09
UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, wh... 57 7e-08
UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=... 50 1e-05
UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza sativa... 46 2e-04
UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S riboso... 45 3e-04
UniRef50_Q019M2 Cluster: DNAJ_NEIMB Chaperone protein dnaJ sp|P6... 42 0.002
UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia intestina... 42 0.003
UniRef50_A2E6R2 Cluster: Ribosomal protein L29, putative; n=4; T... 38 0.063
UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S riboso... 36 0.15
UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniper... 34 0.59
UniRef50_Q9UXG6 Cluster: Putative uncharacterized protein ORF-c4... 33 1.8
UniRef50_Q8Y3Q8 Cluster: Lmo2775 protein; n=5; Listeria|Rep: Lmo... 31 5.5
UniRef50_A7SHI3 Cluster: Predicted protein; n=1; Nematostella ve... 31 5.5
UniRef50_UPI0000F2ADF6 Cluster: PREDICTED: hypothetical protein;... 31 7.2
UniRef50_A3IVA2 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_A2F5A5 Cluster: Putative uncharacterized protein; n=2; ... 30 9.5
UniRef50_A0CPX7 Cluster: Chromosome undetermined scaffold_230, w... 30 9.5
>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
(Human)
Length = 123
Score = 102 bits (244), Expect = 2e-21
Identities = 51/67 (76%), Positives = 54/67 (80%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RVAKVTGG ASKLSKIRVVRK+IARV V +Q K NLR YK KKYKPLDLR KKTRAM
Sbjct: 32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91
Query: 230 RKALTKH 250
R+ L KH
Sbjct: 92 RRRLNKH 98
>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
Eukaryota|Rep: 60S ribosomal protein L35 -
Caenorhabditis elegans
Length = 123
Score = 89.0 bits (211), Expect = 2e-17
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RV+KVTGG ASKLSKIRVVRK IAR+ V +Q K LR Y + KYKP+DLR KKTRA+
Sbjct: 32 RVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAI 91
Query: 230 RKALTKH 250
R+ LT H
Sbjct: 92 RRRLTAH 98
>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
organisms|Rep: 60S ribosomal protein L35 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 203
Score = 75.4 bits (177), Expect = 3e-13
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RV K+ G +SK +I VRK+IARV V + + LR YKNKKY PLDLR + TRA+
Sbjct: 95 RVQKIAAGASSKTQRIHDVRKSIARVLTVINANQRAQLRLFYKNKKYTPLDLRPRLTRAL 154
Query: 230 RKALTKH 250
R+ LTKH
Sbjct: 155 RRRLTKH 161
>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 218
Score = 74.1 bits (174), Expect = 6e-13
Identities = 37/66 (56%), Positives = 46/66 (69%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RV KV GG +SK+ +I +RK IARV V +QK + NLR YK K PLDLRAKKTRA+
Sbjct: 105 RVQKVAGGSSSKILRINSLRKDIARVLTVMNQKQRANLREFYKGKSQIPLDLRAKKTRAI 164
Query: 230 RKALTK 247
R+ L +
Sbjct: 165 RRKLNQ 170
>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
Alveolata|Rep: 60S ribosomal protein L35 - Theileria
annulata
Length = 142
Score = 68.5 bits (160), Expect = 3e-11
Identities = 36/65 (55%), Positives = 43/65 (66%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RV+KVT SKLSKI +VRKA+A+V VY+Q+ K R YK PL+LR K TRA
Sbjct: 51 RVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAK 110
Query: 230 RKALT 244
RK LT
Sbjct: 111 RKGLT 115
>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
protein - Plasmodium falciparum
Length = 124
Score = 62.9 bits (146), Expect = 1e-09
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
R++K G A K SKI VRK +ARV VY+QK K+ LR YKNKK+KP +LR K T+
Sbjct: 32 RISKALGNSA-KNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKNK 90
Query: 230 RKALT 244
R L+
Sbjct: 91 RLQLS 95
>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L35 -
Cryptosporidium hominis
Length = 126
Score = 62.9 bits (146), Expect = 1e-09
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RV + TG +KLS+I VVRK IAR+ + Q+ +LR + K+ PLDLR K TRA
Sbjct: 35 RVIQSTGTAPNKLSRINVVRKGIARILTILSQRNIKSLREKHAGSKFMPLDLRKKLTRAK 94
Query: 230 RKALT 244
R+ALT
Sbjct: 95 RRALT 99
>UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=9; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_44, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 125
Score = 57.2 bits (132), Expect = 7e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
R KV+ G A KL +I +VRK IA+ V +++ + +++N K+ P+DLR KKTRA+
Sbjct: 34 RTVKVSAGNAQKLGRIGLVRKRIAKFLTVINEQRRNSVKNAAKSSTKLPVDLRGKKTRAI 93
Query: 230 RKALTK 247
R+ LT+
Sbjct: 94 RQRLTR 99
>UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=5;
Trypanosomatidae|Rep: 60S ribosomal protein L35,
putative - Leishmania major
Length = 127
Score = 49.6 bits (113), Expect = 1e-05
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK---PLDLRAKKT 220
RV + TGG ++L +IR +RK+IAR+ V +Q + NL+ Y ++K + P LR K T
Sbjct: 33 RVVQQTGGAETRLGRIRPIRKSIARILTVLNQNERSNLKMFYADRKLRCKTPKVLRTKLT 92
Query: 221 RAMRKALTKH 250
R AL ++
Sbjct: 93 HRRRLALKEN 102
>UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza
sativa|Rep: Os06g0732000 protein - Oryza sativa subsp.
japonica (Rice)
Length = 290
Score = 45.6 bits (103), Expect = 2e-04
Identities = 31/67 (46%), Positives = 37/67 (55%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RVA+VTGG +KLS I+ VR A+ Y K K PLDLR KKT A+
Sbjct: 139 RVARVTGGAPNKLSNIK-VRTALREAY-------------KKKKKSLLPLDLRPKKTCAI 184
Query: 230 RKALTKH 250
R+ LTKH
Sbjct: 185 RRRLTKH 191
>UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Homo sapiens|Rep: PREDICTED: similar
to 60S ribosomal protein L35 - Homo sapiens
Length = 106
Score = 45.2 bits (102), Expect = 3e-04
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +2
Query: 152 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH 250
K NL YK KKYK L LR KKTRA+R+ L+KH
Sbjct: 43 KENLGKFYKGKKYKHLHLRPKKTRAVRRPLSKH 75
>UniRef50_Q019M2 Cluster: DNAJ_NEIMB Chaperone protein dnaJ
sp|P63968|DNAJ_NEIMA Chaperone protein dnaJ
gb|AAF40528.1| dna; n=2; Ostreococcus|Rep: DNAJ_NEIMB
Chaperone protein dnaJ sp|P63968|DNAJ_NEIMA Chaperone
protein dnaJ gb|AAF40528.1| dna - Ostreococcus tauri
Length = 575
Score = 42.3 bits (95), Expect = 0.002
Identities = 29/67 (43%), Positives = 32/67 (47%)
Frame = -2
Query: 252 SCLVRALRIARVFLALKSKGXXXXXXXXXXXXXXXFW*YTM*TRAIAFLTTRILDSLEAT 73
S LV+A R+ARVF KS G W T+ AIA T IL SL
Sbjct: 418 SDLVKARRMARVFFLRKSSGWYFAPSYADRKDANCLWRITVRVCAIANRTCLILLSLPGA 477
Query: 72 PPVTLAT 52
PPVTLAT
Sbjct: 478 PPVTLAT 484
>UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia
intestinalis|Rep: GLP_2_9191_9649 - Giardia lamblia ATCC
50803
Length = 152
Score = 41.9 bits (94), Expect = 0.003
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 RVAKVTGG-VASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 226
R K T G V ++++ RV +K +ARV V +QK + R ++ ++ P R + T A
Sbjct: 60 RTMKATAGPVPERIARFRVCKKDVARVLTVINQKARDEARAAFEGAEHIPKTFRPRLTHA 119
Query: 227 MRKALTK 247
MR LT+
Sbjct: 120 MRCQLTE 126
>UniRef50_A2E6R2 Cluster: Ribosomal protein L29, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein L29,
putative - Trichomonas vaginalis G3
Length = 124
Score = 37.5 bits (83), Expect = 0.063
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 59 KVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKA 238
K A+KL++I+ R+ +ARV + + L+ Y K P+DLR + +++R
Sbjct: 35 KAASAAATKLTEIKNTRRDVARVKSILMVSQRKALQEKYAKAKLVPIDLRKHQEKSLRNK 94
Query: 239 L 241
L
Sbjct: 95 L 95
>UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Bos taurus|Rep: PREDICTED: similar to
60S ribosomal protein L35 - Bos taurus
Length = 98
Score = 36.3 bits (80), Expect = 0.15
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +2
Query: 53 VAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKT 220
+ K+T V+SK SKI V K I+R+ V +Q K NLR KYKPL + T
Sbjct: 19 IIKMTSSVSSKPSKILGVCKFISRLLTVVNQTQKENLR------KYKPLQSKKAHT 68
>UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniperca
chuatsi|Rep: 60S ribosomal protein L35 - Siniperca
chuatsi (Chinese perch)
Length = 57
Score = 34.3 bits (75), Expect = 0.59
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 191 KPLDLRAKKTRAMRKALTKH 250
KPLDLR KKTR +R+ L KH
Sbjct: 1 KPLDLRPKKTRVLRRRLNKH 20
>UniRef50_Q9UXG6 Cluster: Putative uncharacterized protein
ORF-c40_015; n=1; Sulfolobus solfataricus|Rep: Putative
uncharacterized protein ORF-c40_015 - Sulfolobus
solfataricus
Length = 360
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +2
Query: 65 TGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKA 238
T G+ S L K ++ IV+ QK+K +L +Y+NK + K+R+ RKA
Sbjct: 183 TVGLNSMLHKFELIYTIDPDYIIVFDQKIKDSLPENYRNKAILLKSVNLHKSRSERKA 240
>UniRef50_Q8Y3Q8 Cluster: Lmo2775 protein; n=5; Listeria|Rep:
Lmo2775 protein - Listeria monocytogenes
Length = 722
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 166 SKIDLHLLVIHNVNTCDSFSYNTDLGQFRSNSTSNFSNP 50
SK DL + +I+ N D FSY+++ G FR T N ++P
Sbjct: 507 SKEDLRVNIIYAENNQDYFSYDSNTGDFR---TGNITDP 542
>UniRef50_A7SHI3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1108
Score = 31.1 bits (67), Expect = 5.5
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 77 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 247
ASK SK RV R IA++ H ++ +RN N K +R K+RAM+K T+
Sbjct: 987 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 1041
>UniRef50_UPI0000F2ADF6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 744
Score = 30.7 bits (66), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 139 SPEDEGQS*KPLQKQEIQAFRFKSQEDP 222
SP+D+ QS KPL+ QEIQ +F + P
Sbjct: 480 SPKDDYQSSKPLESQEIQPQQFLKSKAP 507
>UniRef50_A3IVA2 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 346
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 149 MKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHXXXXXXXXXXXXNLSSHLESMPLK 322
MK + H + KK+ ++ KT +R+A+TKH L ++ E MP++
Sbjct: 215 MKYAVFPHLEGKKFN-IETAKDKTNYLREAMTKHLAKKDAYFDFCIQLQTNAEKMPIE 271
>UniRef50_A2F5A5 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 343
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 70 WSCF*TVQDPCCKKSYRTCLHCVSPEDEGQS*KPLQKQE 186
W F V +R C + PEDEG +PL+K +
Sbjct: 296 WGIFFLVAPVTVYLGWRLCYALIQPEDEGSKNEPLEKND 334
>UniRef50_A0CPX7 Cluster: Chromosome undetermined scaffold_230,
whole genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_230,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 3164
Score = 30.3 bits (65), Expect = 9.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 40 NKSSGC*SYWWSCF*TVQDPCCKKSYRTCLHCV-SPEDEGQS*KPLQKQEI 189
N S C +Y++ +P C K Y TC C S +E + PL K+E+
Sbjct: 777 NNSCSCPAYYYD---QPDNPICIKCYNTCYGCKGSKNNECTACNPLSKREL 824
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,239,540
Number of Sequences: 1657284
Number of extensions: 3513043
Number of successful extensions: 10464
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10460
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -