Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    79   2e-16
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   2.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   4.4  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   4.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   7.8  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 79.0 bits (186), Expect = 2e-16
 Identities = 38/67 (56%), Positives = 48/67 (71%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RV K+ GG  SKLSKI+  RK IAR+  V ++  ++  R  YKNKKY PLDLR KKTRA+
Sbjct: 31  RVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAI 90

Query: 230 RKALTKH 250
           R+ALT +
Sbjct: 91  RRALTPY 97


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 237 LLLNTKKDQDEERDQKEISLPT*SLCR 317
           L   TKK + E+  +K+IS PT  LCR
Sbjct: 218 LKATTKKQKYEKIMEKKISTPTEVLCR 244


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 345 LILIIYSSFNGIDSRWEERFLSDLFPRLDLS 253
           LI  +  S+   DS+W E+FL D F  + ++
Sbjct: 25  LIWFLGHSYKIEDSQWPEKFLYDSFSLITIT 55


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 167 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHXXXXXXXXXXXXNLSSHLESM 313
           +H KN++Y  L+ + +K     KAL   TKH            +  SH+E +
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTKDDVNLVIPGSTWSHIEGV 86


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 115 SFSYNTDLGQFRSNSTSNFSNPK 47
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,053
Number of Sequences: 5004
Number of extensions: 15793
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)