Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20258
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 85 1e-17
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 46 1e-05
12_02_0172 - 14891923-14892102,14892894-14892980 28 1.8
12_01_0152 - 1168928-1169377 28 2.3
11_01_0155 - 1287003-1287452 28 2.3
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 4.0
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 5.3
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 7.1
01_01_0101 - 766382-767487,767599-767756,767900-768615 26 7.1
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 26 9.3
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 85.4 bits (202), Expect = 1e-17
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RVAKVTGG +KLSKI+VVR +IARV V QK + LR YK K PLDLR KKTRA+
Sbjct: 32 RVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAI 91
Query: 230 RKALTKH 250
R+ LTKH
Sbjct: 92 RRRLTKH 98
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 45.6 bits (103), Expect = 1e-05
Identities = 31/67 (46%), Positives = 37/67 (55%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
RVA+VTGG +KLS I+ VR A+ Y K K PLDLR KKT A+
Sbjct: 139 RVARVTGGAPNKLSNIK-VRTALREAY-------------KKKKKSLLPLDLRPKKTCAI 184
Query: 230 RKALTKH 250
R+ LTKH
Sbjct: 185 RRRLTKH 191
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 53 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 226
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 227 MRKALTK 247
R+A TK
Sbjct: 60 SRRAKTK 66
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 59 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 148
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 59 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 148
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 86 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 205
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 151 HLLVIHNVNTCDSFSYNTDLG 89
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 7.1
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 103 NTDLGQFRSNSTSNFSNPKI 44
NT+ G+++ + SNFS+P++
Sbjct: 1266 NTENGRYKGRAPSNFSSPRV 1285
>01_01_0101 - 766382-767487,767599-767756,767900-768615
Length = 659
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 7 RETA*GAKDRINKSSGC*SYWWSCF 81
R+T G+K+RI + Y+WSCF
Sbjct: 239 RQTGTGSKERIANIAIIDFYFWSCF 263
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 50 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMK 154
R+AKV G V+ +++ + R I VY+V +K
Sbjct: 858 RIAKVLGVVSDQIAFVSAARPRIDEVYLVQGHILK 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,651,707
Number of Sequences: 37544
Number of extensions: 94225
Number of successful extensions: 265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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