Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         91   2e-19
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.26 
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   1.8  
SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)                    26   9.7  
SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 45/66 (68%), Positives = 52/66 (78%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKI+VVRK++ARV  V  Q  + NLR  Y+ KKY PLDLR K TRAM
Sbjct: 40  RVAKVTGGAASKLSKIKVVRKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAM 99

Query: 230 RKALTK 247
           R++LTK
Sbjct: 100 RRSLTK 105


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +2

Query: 77  ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 247
           ASK SK RV R  IA++    H  ++  +RN   N K     +R  K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 223
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 303 RWEERFLSDLFPRLDLSSCLVRALRIARVF 214
           RW  R    LF ++ L   +VR+LR+A+VF
Sbjct: 49  RWRRR--CRLFHKMKLDDSVVRSLRVAKVF 76


>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
          Length = 245

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 59  KVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKA 238
           K  G V S +    V ++ I ++ +    KMK  + +HY++       L AK T   +  
Sbjct: 84  KYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKLTNKSKCR 143

Query: 239 LTKH 250
             K+
Sbjct: 144 SVKY 147


>SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 RVYIVYHQKMKVNLRNHYKNKKY 190
           +VYIV H   +V +  HY N+ Y
Sbjct: 160 QVYIVKHHSNQVYIDKHYSNQVY 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,415
Number of Sequences: 59808
Number of extensions: 119247
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)