Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35 pro...   102   4e-22
CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.               102   4e-22
BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35 p...   102   4e-22
BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35 p...   102   4e-22
BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.       102   4e-22
BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35 p...   102   4e-22
AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35 p...   102   4e-22
AL354928-7|CAI39638.1|   95|Homo sapiens ribosomal protein L35 p...    62   4e-10
AB046409-1|BAB21255.1|   33|Homo sapiens ribosomal protein L35 p...    51   9e-07
AB076384-1|BAB82982.1|  376|Homo sapiens X box-binding protein s...    28   7.0  

>U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score =  102 bits (244), Expect = 4e-22
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK KKYKPLDLR KKTRAM
Sbjct: 32  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAM 91

Query: 230 RKALTKH 250
           R+ L KH
Sbjct: 92  RRRLNKH 98


>AL354928-7|CAI39638.1|   95|Homo sapiens ribosomal protein L35
           protein.
          Length = 95

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYK 178
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q  K NLR  YK
Sbjct: 31  RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYK 73


>AB046409-1|BAB21255.1|   33|Homo sapiens ribosomal protein L35
           protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 145
           RVAKVTGG ASKLSKIRVVRK+IARV  V +Q
Sbjct: 2   RVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33


>AB076384-1|BAB82982.1|  376|Homo sapiens X box-binding protein
           spliced form protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 327 SSFNGIDSRWEERFLSDLFPRL 262
           SS  G++  WE+ F ++LFP+L
Sbjct: 352 SSLLGVNHSWEDTFANELFPQL 373


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,552,425
Number of Sequences: 237096
Number of extensions: 524887
Number of successful extensions: 1178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)