Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...   108   2e-24
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...   108   2e-24
AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...   107   3e-24
AY075535-1|AAL68342.1|  404|Drosophila melanogaster RH07911p pro...    27   8.6  
AE014135-209|ABC65833.1|  404|Drosophila melanogaster CG17471-PB...    27   8.6  
AE014135-208|ABC65832.1|  404|Drosophila melanogaster CG17471-PA...    27   8.6  

>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score =  108 bits (260), Expect = 2e-24
 Identities = 54/65 (83%), Positives = 57/65 (87%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  SKLSKIRVVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAI 91

Query: 230 RKALT 244
           RKAL+
Sbjct: 92  RKALS 96


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score =  108 bits (260), Expect = 2e-24
 Identities = 54/65 (83%), Positives = 57/65 (87%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  SKLSKIRVVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAI 91

Query: 230 RKALT 244
           RKAL+
Sbjct: 92  RKALS 96


>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score =  107 bits (258), Expect = 3e-24
 Identities = 54/65 (83%), Positives = 57/65 (87%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  SKLSKIRVVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+
Sbjct: 32  RVAKVTGGSPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAI 91

Query: 230 RKALT 244
           RKAL+
Sbjct: 92  RKALS 96


>AY075535-1|AAL68342.1|  404|Drosophila melanogaster RH07911p
           protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 223
           +A +++ +  H   K N+ +H+K K+Y PL  R  + R
Sbjct: 65  RAYSKIKVDNHLFNKENMPSHFKVKEYCPLVFRNLRER 102


>AE014135-209|ABC65833.1|  404|Drosophila melanogaster CG17471-PB,
           isoform B protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 223
           +A +++ +  H   K N+ +H+K K+Y PL  R  + R
Sbjct: 65  RAYSKIKVDNHLFNKENMPSHFKVKEYCPLVFRNLRER 102


>AE014135-208|ABC65832.1|  404|Drosophila melanogaster CG17471-PA,
           isoform A protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 110 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 223
           +A +++ +  H   K N+ +H+K K+Y PL  R  + R
Sbjct: 65  RAYSKIKVDNHLFNKENMPSHFKVKEYCPLVFRNLRER 102


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,086
Number of Sequences: 53049
Number of extensions: 168650
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 817309116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)