Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    89   8e-19
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 44/67 (65%), Positives = 51/67 (76%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RV+KVTGG ASKLSKIRVVRK IAR+  V +Q  K  LR  Y + KYKP+DLR KKTRA+
Sbjct: 32  RVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAI 91

Query: 230 RKALTKH 250
           R+ LT H
Sbjct: 92  RRRLTAH 98


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 137 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 250
           Y  ++  +L NHYKN  + +    R  K  A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370


>U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical
           protein C17H11.6c protein.
          Length = 778

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 228 CARLLLNTKKDQDEER-DQKEIS 293
           CA +LL+++   DEE+ D+K++S
Sbjct: 39  CAEMLLSSRNQDDEEQSDEKQLS 61


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 228 CARLLLNTKKDQDEER-DQKEIS 293
           CA +LL+++   DEE+ D+K++S
Sbjct: 39  CAEMLLSSRNQDDEEQSDEKQLS 61


>U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical
           protein C17H11.6a protein.
          Length = 793

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 228 CARLLLNTKKDQDEER-DQKEIS 293
           CA +LL+++   DEE+ D+K++S
Sbjct: 39  CAEMLLSSRNQDDEEQSDEKQLS 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,791,176
Number of Sequences: 27780
Number of extensions: 87265
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)