Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.34 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.34
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 139 IHNVNTCDSFSYNTDLGQFRSNSTSNF 59
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 LLLNTKKDQDEERDQKEI 290
           L+   KKD+DEE +++ +
Sbjct: 350 LIERPKKDEDEEEEEEVV 367


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -2

Query: 342 ILIIYSSFNGIDSRWEERFLSDLFPRLDLSSCLVRALRIARVFLALK 202
           I+  +  + G+    +  + + LFP   L+  L+R L +      LK
Sbjct: 218 IMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLK 264


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -2

Query: 342 ILIIYSSFNGIDSRWEERFLSDLFPRLDLSSCLVRALRIARVFLALK 202
           I+  +  + G+    +  + + LFP   L+  L+R L +      LK
Sbjct: 271 IMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLK 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,648
Number of Sequences: 438
Number of extensions: 982
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)