Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20258
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...    91   2e-19
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)            91   2e-19
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...    91   2e-19
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...    91   2e-19
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...    91   2e-19

>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  +KLSKI+VVRK+IA+V  V  QK K  LR  YKNKK  PLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAI 91

Query: 230 RKALTKH 250
           R+ LTKH
Sbjct: 92  RRRLTKH 98


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  +KLSKI+VVRK+IA+V  V  QK K  LR  YKNKK  PLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAI 91

Query: 230 RKALTKH 250
           R+ LTKH
Sbjct: 92  RRRLTKH 98


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  +KLSKI+VVRK+IA+V  V  QK K  LR  YKNKK  PLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAI 91

Query: 230 RKALTKH 250
           R+ LTKH
Sbjct: 92  RRRLTKH 98


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  +KLSKI+VVRK+IA+V  V  QK K  LR  YKNKK  PLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAI 91

Query: 230 RKALTKH 250
           R+ LTKH
Sbjct: 92  RRRLTKH 98


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +2

Query: 50  RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAM 229
           RVAKVTGG  +KLSKI+VVRK+IA+V  V  QK K  LR  YKNKK  PLDLR KKTRA+
Sbjct: 32  RVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAI 91

Query: 230 RKALTKH 250
           R+ LTKH
Sbjct: 92  RRRLTKH 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,494,128
Number of Sequences: 28952
Number of extensions: 83259
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)