Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20257
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   1.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   5.4  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.4  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    26   5.4  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/67 (25%), Positives = 37/67 (55%)
 Frame = +2

Query: 566 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYIWRERNLMPN*LKYLTR 745
           +N I + G  +S+   ++  D +FYV   + IK  ++    +Y+ ++R+++ N +K+   
Sbjct: 450 MNCISYLGNTTSR---QVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSN-IKWQYM 505

Query: 746 AINRRCR 766
           AI+   R
Sbjct: 506 AIDEAHR 512


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 297 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 392
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 367 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPI 260
           TY+   I SS+ L+   S L++++S  +ASSS  PI
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPI 699


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 153 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 28
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 566 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 661
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 302 REFCSYSIVVREADSFKSSSWVSPSE 225
           RE  +   VV E+DS K   W+ PS+
Sbjct: 49  REISTIPKVVTESDSGKEEKWIYPSQ 74


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 690 SPRLYIMGTLIVLSLLT*KSRSLVSRSS 607
           SP LY+   ++   L T  SRSLV+RS+
Sbjct: 79  SPVLYLFSYILPSKLFTIFSRSLVNRSA 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,316
Number of Sequences: 5004
Number of extensions: 63466
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)