Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20257
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 61 9e-10
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 58 8e-09
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 55 8e-08
11_01_0767 + 6438648-6438809,6439146-6440000 50 3e-06
11_02_0012 - 7346282-7347136,7347234-7347593 49 5e-06
01_01_1152 + 9170628-9171899 48 9e-06
11_02_0011 - 7337618-7338496,7338596-7338991 47 2e-05
11_01_0771 + 6453130-6454488 45 8e-05
04_04_0619 + 26652923-26653267,26653440-26654273 44 2e-04
11_02_0014 - 7352619-7352918,7353173-7353418 43 2e-04
05_06_0044 - 25150322-25151260 41 0.001
11_01_0750 - 6315126-6315896,6316371-6316784 38 0.007
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 2.5
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 3.2
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 5.7
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 7.5
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 9.9
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 9.9
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 28 9.9
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 9.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 61.3 bits (142), Expect = 9e-10
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
RIKD + D++ AT AVL NA+YFKG W SKFD R TSD FY+ + P M
Sbjct: 156 RIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM 211
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM-YKRG 688
IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F++ K+++ P M +
Sbjct: 229 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFMSTSKK 288
Query: 689 DYIWRERNL 715
YI NL
Sbjct: 289 QYILSYDNL 297
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKR 685
IK++ P S++ T VL NA+YFKGAW+ KFD T D +F++ ++++ P M R
Sbjct: 481 IKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTR 538
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F + K++ P M
Sbjct: 21 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFM 75
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYK-RG 688
I +++ P+S S T V+ NAIYFKG W + FD+ T++R+F +++VP M + G
Sbjct: 74 ITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSG 133
Query: 689 DY 694
Y
Sbjct: 134 SY 135
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGD 691
I++++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ P M R D
Sbjct: 140 IREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSRED 199
>01_01_1152 + 9170628-9171899
Length = 423
Score = 48.0 bits (109), Expect = 9e-06
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
I+D++ P+S+ S+T VL NA++FKG WS F T F++ ++ P M
Sbjct: 175 IRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGD 691
I +++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R D
Sbjct: 152 IPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSRED 211
>11_01_0771 + 6453130-6454488
Length = 452
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 640
I D++ P S+ TA VL NAIYFKG W F+E T + FY
Sbjct: 189 ITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
R+ + ++P + S+T VL NA++FK W KF+ T R F+ + VP +
Sbjct: 134 RLNNTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGD 691
I +++ S+ T VLVNAIYFKG WS F T+ F+ ++ V M R D
Sbjct: 102 IPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSRED 161
>05_06_0044 - 25150322-25151260
Length = 312
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 548 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
+ + L N++YF W F LT + DF+VS D ++VP M
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 676
+ L+ ++ T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 158 VTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 175 VLSAFSVLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVIFDQLKALSL 345
+ + SV L +L+L S + + AS +LY+ N+R ++ +F LK S+
Sbjct: 1616 ITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSV 1672
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 273 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 398
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 291 TEFASKSRDLRSIKGVELKMANKVYVHDG 377
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 331 LIDRRSRLLLANSVRIASSSGK 266
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 138 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 34
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 138 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 34
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 81 DGCHCRDGDSKQTNDCLHVCGLRLLV 4
DGC C D D+ D GLRLL+
Sbjct: 216 DGCSCADADADADTDAPPCRGLRLLM 241
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 292 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 459
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,280,192
Number of Sequences: 37544
Number of extensions: 402546
Number of successful extensions: 1074
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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