Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20257
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 49 5e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 48 1e-05
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 48 1e-05
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 30 2.5
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 4.4
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 5.8
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 494 RKYQ*RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPM 673
+K + +IK+L+ + T LVNA+YFKG+W F+ T F + + I+V
Sbjct: 139 QKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQF 198
Query: 674 MYKRGDYIWRERNLM 718
MY+ ++ + E + +
Sbjct: 199 MYQSSEFRYLESSTL 213
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 KAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 434
K FP D + ++ + + G ++ MAN+++ G ++ E F S++ F++++
Sbjct: 58 KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117
Query: 435 QNIDFSKNTVAAK-SINDWVEENTNNALR 518
+D+ KN+ A+ ++N WVE+ T + ++
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 694 YMERAQLNAQLIEIPYKGDQSSL 762
Y+E + L Q++E+PY G++ S+
Sbjct: 207 YLESSTLGCQIVELPYAGEKLSM 229
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 685
IK+L+ ++S T ++VNA+YFKG W +F E T F+V S + I+V MM ++
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNAL 515
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV + T +
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113
Query: 516 R 518
+
Sbjct: 114 K 114
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRG 688
+I DL+ P + T LVNAIYFKG W F + + +F + ++V MM+++
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKS 166
Query: 689 DY 694
+
Sbjct: 167 KF 168
Score = 35.1 bits (77), Expect = 0.066
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNAL 515
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T +
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +3
Query: 249 AFKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 428
AF F DD + E S+++D +++ K + K +E+ + S +F+
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473
Query: 429 DVQNIDFSKNTVAAKSINDW---VEENTNNALR 518
+ +N+DFS + ++ DW VE N+LR
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVENTMRNSLR 506
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 391 RILQSFPGTSSIRTSKTLISRRIQSQLS 474
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 67 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 234
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 75 CHCRDGDSKQTNDCL 31
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 712 VALSPYIIAAFIHHGYFDCF 653
V LS Y++ +HH YF CF
Sbjct: 296 VPLSLYVVVVTVHHHYFFCF 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,569,436
Number of Sequences: 59808
Number of extensions: 469614
Number of successful extensions: 1348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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