Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20256
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   109   4e-25
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   109   4e-25
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.1  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   4.1  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.4  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   7.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.4  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  109 bits (262), Expect = 4e-25
 Identities = 48/65 (73%), Positives = 56/65 (86%)
 Frame = +2

Query: 59  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 238
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 239 VGIDI 253
           V +DI
Sbjct: 61  VALDI 65



 Score =  107 bits (258), Expect = 1e-24
 Identities = 45/87 (51%), Positives = 67/87 (77%)
 Frame = +1

Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 435
           NG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++
Sbjct: 67  NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125

Query: 436 RTDFDSGKELLCTVLKSCGEECVIASK 516
              F+ GK+L+ TV+ + GEE  +A +
Sbjct: 126 EEGFEEGKDLIITVVSAMGEEIALACR 152


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  109 bits (262), Expect = 4e-25
 Identities = 48/65 (73%), Positives = 56/65 (86%)
 Frame = +2

Query: 59  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 238
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 239 VGIDI 253
           V +DI
Sbjct: 61  VALDI 65



 Score =  108 bits (260), Expect = 8e-25
 Identities = 46/92 (50%), Positives = 68/92 (73%)
 Frame = +1

Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 435
           NG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++
Sbjct: 67  NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125

Query: 436 RTDFDSGKELLCTVLKSCGEECVIASKQTQLS 531
              FD G++L+ TV+ + GEE  +A +    S
Sbjct: 126 EEGFDEGRDLIITVVSAMGEETALACRDAPSS 157


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 295  NMDVPHVKREDYQLTDISDDGYL 363
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 151 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 246
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 9   AVGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPC 125
           AVG +  L   +     W+  K +T+  ET  PQ    C
Sbjct: 154 AVGFVDALFCTRIPASLWIKYKEYTTSAETTVPQECGLC 192


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 649  NNTEVVLGDRGAPPLADVTRNTSP 720
            N+  + L DR  PP+   +R TSP
Sbjct: 1059 NSASLSLNDRPGPPMEPASRETSP 1082


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 472 TVLKSCGEECVIASKQTQLSTNKPTQHL*G 561
           TV K+  EECV+AS +T L T  PT  + G
Sbjct: 306 TVAKT--EECVLASIETFLDTGIPTNPVNG 333


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 506  MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 393
            +  S+P   STV N+S P++ S  +   +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 506  MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 369
            +  S+P   STV N+S P++ S  +    P + S +L SS     S+I
Sbjct: 3138 LNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSI 3185


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 313 VKREDYQLTDISDDGYL 363
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,971
Number of Sequences: 5004
Number of extensions: 67070
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)