Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20256
(795 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 5e-21
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 1.4
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 3.1
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08) 29 4.3
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 4.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 7.6
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 28 7.6
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 5e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +2
Query: 53 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 232
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 68.1 bits (159), Expect = 8e-12
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +1
Query: 331 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 510
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 511 SK 516
K
Sbjct: 703 VK 704
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 530 ESC--VCFDAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 411
+SC +CF + S P + H+N+ P S NC P PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 66 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 200
T+K HT++P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 18 HISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 140
H L K KT + T+K +T++P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 54 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 209
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 682 APPLADVTRNTSPLTSPTRSVVSPQPVYLTEFKGHL 789
AP +++V +T P +SP R +PQP Y K +L
Sbjct: 325 APSVSEVPASTVPSSSPLRCSPAPQPTYSEPRKTNL 360
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 117 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISQW*KV*RY 278
+PC ++ C + +S+ V ++K P P TL ++G ++ K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 99 PGPQPPSPCNVRP 137
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
Length = 629
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 238 GWD*YLNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 417
GWD + N + +C ST + + HV +Y+ + L N +ED K+ +
Sbjct: 204 GWDMFSNDLDFAKVCSSTQSWRISHV-NINYESVLMRSGEPLCGSMSNKRCKEDEKLVNS 262
Query: 418 DLGT 429
LG+
Sbjct: 263 ALGS 266
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 33 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 137
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 384
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 283 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 462
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 463 LLCTVLKSCGEECVIASKQTQL 528
T KS GEE V + L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 491 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 360
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 298 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 465
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 466 LCTVLKSCGEECVIASKQTQLS 531
LC L+ C Q+S
Sbjct: 95 LCMTLRRFAYPCRYEDLVPQIS 116
>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 310 GVRPCCVWRDRYLHTFYH*DINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 137
G+R C D L F + + + + S A ++ +G GH N + L H + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +1
Query: 274 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 441
D+ S H +D+P+ E++ + +D ++ +D L E L+IPD T +
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648
Query: 442 DFDSGKELLCTVLKSCGEECVIASKQTQLSTNKP 543
SG E LC VLK C A + S P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVG 244
+ G +M +G+PCKI + K G HG +H+ G
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,283,222
Number of Sequences: 59808
Number of extensions: 560197
Number of successful extensions: 1648
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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