Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20255
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.4  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 541 MCSGIGTSRRPRQQAMMIFHTH*VRLAHIFAHNSTPGEYLEVAHS 407
           +C   G  RR  +Q    F T  +     F H  T    +E+AH+
Sbjct: 149 VCGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHA 193


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 541 MCSGIGTSRRPRQQAMMIFHTH*VRLAHIFAHNSTPGEYLEVAHS 407
           +C   G  RR  +Q    F T  +     F H  T    +E+AH+
Sbjct: 208 VCGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHA 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,412
Number of Sequences: 336
Number of extensions: 3246
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)