Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20255
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    65   1e-11
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    57   3e-09
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    50   3e-07
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    47   3e-06
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    43   6e-05
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    34   0.020
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    33   0.062
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   4.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   5.4  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    26   7.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.1  

>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = +1

Query: 328 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           RS +G L   P SRDIKI +++++F+G  L+++  +ELN G+RYGL+G NG GKS+ L
Sbjct: 61  RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFL 118



 Score = 33.1 bits (72), Expect = 0.047
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 698 YDRLDDLSADTAEARAANILHGL 766
           Y+ LDD+   T EA+AA ILHGL
Sbjct: 185 YEELDDMDPSTFEAKAAMILHGL 207



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           L +D    ++   R  +VG NG GKS+LL
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLL 433


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 27/57 (47%), Positives = 39/57 (68%)
 Frame = +1

Query: 337 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
           TG+L   P SRD+++   S++ +G  L++D+ L L  GRRYGL+  NG GKS+LL A
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHA 320


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 25/49 (51%), Positives = 30/49 (61%)
 Frame = +1

Query: 361 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
           +S+DIKI    + F G  +L    L L  GRRYGL G NG GKS+LL A
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRA 227



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +3

Query: 480 VWKIIIACCLGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKL----EKLAE 647
           + K  +   L RRE+ IP HI I H+ +EM   D  ALQ V++ D  R  L    EK+  
Sbjct: 219 IGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITN 278

Query: 648 MLAHCEDD 671
            L+  E +
Sbjct: 279 RLSTIEKE 286



 Score = 32.3 bits (70), Expect = 0.081
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +2

Query: 686 LMDVYDRLDDLSADTAEARAANILHGL 766
           L+D+ ++L ++ +D AE+RAA IL GL
Sbjct: 315 LLDIQNKLSEMDSDRAESRAATILAGL 341



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 406 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           G  +L+   +++    R G+VG NG GKS++L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTML 561


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = +1

Query: 385 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
           +FS+ + G  LL  T L L  G RYG+VG NGCGKS+LL A
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRA 489



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 373 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           +K+ N S T+  ++   L +  + L+   R  ++G NG GKS+L+
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLI 736


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = +1

Query: 370 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
           D+    FS+ +    LL  T L L  GRRYGL G NG GKS+L+ A
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRA 479



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 373 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           IK+ + S  + G+    L D   +++   R  ++G NG GKS+L+
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLI 717


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 373 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
           I + + +  ++G ++L D    +  G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 370 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           ++ ++N S TF   +   L    L+L  G R  LVG NG GKS+LL
Sbjct: 2   EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLL 47


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 513 RREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEH*W 692
           + ++P      +F+L   +PAS  T         ++  + +K+ E +A  +D   +E   
Sbjct: 298 QHKIPAINEDGLFYLITHLPASGGTGAAAQAAQQKKEQEEKKILETVARMDDSNKKES-- 355

Query: 693 MYTIVWTI-*APTRQKRV 743
             + +WT   APT  K +
Sbjct: 356 QPSQIWTSKYAPTSLKDI 373


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 370 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLLAA 507
           +IK   FS +  G    + TL +++   R G    +VG  G GKSSLL A
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEA 628



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 358  PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
            P    IK  ++S+ +  +   +L D  + +    + G+VG  G GKS+L  A
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLA 1270


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
           +L      +  G +   VG +GCGKS++L
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTIL 486


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 389 KLAILISLERGCTASDPVQERASEFIFASASSLRHNASSAVSSRSPWI 246
           K ++ + L   CT    ++  A + + +S SSL H   +   SR P I
Sbjct: 98  KCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLI 145


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 486 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 382
           S+P++   P+  PT+QLQ S L  L P E   KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,619
Number of Sequences: 5004
Number of extensions: 57240
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)