Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20255
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 88 6e-18
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 85 6e-17
02_05_1297 - 35536193-35536312,35536405-35536467,35536610-355369... 56 2e-08
03_04_0206 - 18493178-18495310 56 4e-08
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 40 0.003
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847... 35 0.064
08_02_1616 + 28260204-28262555 35 0.085
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 34 0.11
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 34 0.11
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 32 0.60
01_06_0857 - 32507119-32507328,32507936-32508058,32508194-325082... 31 1.4
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 30 2.4
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 4.2
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 29 4.2
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 29 5.6
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 28 9.7
07_03_1700 - 28810239-28810870,28811304-28812594 28 9.7
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 28 9.7
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 88.2 bits (209), Expect = 6e-18
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +1
Query: 328 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
R+CTG LA HP SRDI I + S+TF+G +L+ D+ LELN GRRYGL+GLNGCGKS+LL A
Sbjct: 51 RTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTA 110
Score = 71.7 bits (168), Expect = 6e-13
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +3
Query: 486 KIIIACCLGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCE 665
K + +G RE+PIPEH+DI+HL+ E+ ASD +ALQ V+ DEER+KLEK AE+L+ +
Sbjct: 104 KSTLLTAIGCRELPIPEHMDIYHLSSEIEASDMSALQAVICCDEERMKLEKEAEILSAQD 163
Query: 666 DDESQEH*WMYTIVWTI*APTRQKR 740
D +Y + + A T +KR
Sbjct: 164 DGGGDALDRIYERLEALDASTAEKR 188
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2
Query: 683 ALMDVYDRLDDLSADTAEARAANILHGL 766
AL +Y+RL+ L A TAE RAA IL GL
Sbjct: 169 ALDRIYERLEALDASTAEKRAAEILFGL 196
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +1
Query: 328 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
R+CT L HP SRDI I + S+TF+G +LL DT LELN GRRYGL+GLNGCGKS LL A
Sbjct: 34 RTCTAVLTSHPLSRDIHIESLSLTFHGHDLLLDTDLELNYGRRYGLLGLNGCGKSCLLKA 93
Score = 72.1 bits (169), Expect = 5e-13
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +3
Query: 507 LGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEH 686
+G RE+PIP H+DI+HLT E+ ASD +ALQ V+ DE+R++LEK AE+LA +D +
Sbjct: 94 IGCRELPIPPHMDIYHLTHEIEASDMSALQAVISCDEQRLQLEKEAEILAAQDDGGGEAL 153
Query: 687 *WMYTIVWTI*APTRQKR 740
+Y + I A T +KR
Sbjct: 154 DRVYERLEAIDASTAEKR 171
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2
Query: 683 ALMDVYDRLDDLSADTAEARAANILHGL 766
AL VY+RL+ + A TAE RAA IL GL
Sbjct: 152 ALDRVYERLEAIDASTAEKRAAEILFGL 179
>02_05_1297 -
35536193-35536312,35536405-35536467,35536610-35536942,
35537098-35537184,35538337-35538399,35538604-35538750,
35538900-35539001,35539069-35539197,35539506-35539664,
35539726-35539967,35540317-35540506,35540692-35540907,
35541536-35541760
Length = 691
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +1
Query: 358 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
P RDI + NFS+T G +L+QD + L GR YGLVG NG GK+S L A
Sbjct: 177 PAVRDIHMENFSVTVGGRDLIQDCTVTLAFGRHYGLVGRNGTGKTSFLRA 226
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 528 IPEHIDIFHLTREMPASDKTALQCVMEVDEERVKL 632
IP++ I H+ +E+ D TALQCV+ D ERV+L
Sbjct: 235 IPKNCQILHVEQEVVGDDTTALQCVLNADIERVQL 269
Score = 35.9 bits (79), Expect = 0.037
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 674 ITGALMDVYDRLDDLSADTAEARAANILHGLA 769
I+ L ++Y RL+ + AD AEARAA+IL GL+
Sbjct: 316 ISKRLEEIYKRLEFIDADAAEARAASILAGLS 347
>03_04_0206 - 18493178-18495310
Length = 710
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 343 SLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
S A +DI + NFS++ G ELL++ L ++ GRRYGLVG NG GKS+LL
Sbjct: 148 SAAADDNIKDIVLENFSVSARGKELLKNASLRISHGRRYGLVGPNGMGKSTLL 200
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 507 LGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQE 683
L R+VP+P ID+ + +E+ +++AL+ V+ DEE L L D + E
Sbjct: 203 LSWRQVPVPRSIDVLLVEQEIIGDNRSALEAVVAADEELAALRAEQAKLEASNDADDNE 261
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 686 LMDVYDRLDDLSADTAEARAANILHGL 766
L +VY++L+ +D A ARA+ IL GL
Sbjct: 263 LAEVYEKLNLRDSDAARARASKILAGL 289
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 367 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
RD+ + + + G L + L + GRRYGLVG NG GK++LL
Sbjct: 87 RDVVVEDSDVWVQGVALFEGASLRVAHGRRYGLVGPNGKGKTTLL 131
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 686 LMDVYDRLDDLSADTAEARAANILHGL 766
L +VY+ L DTA ARAA IL GL
Sbjct: 197 LAEVYEELTQRGWDTAPARAAKILAGL 223
>01_06_0555 - 30182818-30183169,30183268-30183674,30183804-30184773,
30184829-30184902,30184941-30185084,30185186-30185365,
30185448-30185988,30186081-30186538,30187723-30187901,
30187998-30188052,30188217-30188468
Length = 1203
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+LQD L++ G GLVG +GCGKS+++
Sbjct: 982 ILQDFSLDVKAGTSIGLVGRSGCGKSTII 1010
>08_02_1616 + 28260204-28262555
Length = 783
Score = 34.7 bits (76), Expect = 0.085
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ +D L GR LVG +GCGKSS+LA
Sbjct: 539 QVFRDLSLRARAGRTLALVGASGCGKSSVLA 569
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 373 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+++ + ++ G +L+D E+ G + GLVG+NG GK++ L
Sbjct: 91 VRLEGIAKSYKGVTVLRDVSWEVQRGEKVGLVGVNGAGKTTQL 133
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 373 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+ I N F +L + L + G + ++G NGCGKS+LL
Sbjct: 434 LTIRNLEFGFGEEKLFNNANLIVERGEKIAIIGPNGCGKSTLL 476
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 358 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
PR DI + + + + + +L+ + +N G + G+VG G GKS+L+ A
Sbjct: 1232 PRRGDIDVKDLKVRYRSNTPLILKGITISINSGEKIGVVGRTGSGKSTLVQA 1283
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 409 SELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
S +L+D LEL G ++G GCGKSSLL
Sbjct: 630 SMILRDVSLELQKGIFVAIIGEVGCGKSSLL 660
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 418 LQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
L D ++ G + G++G G GKSS+L A
Sbjct: 1139 LNDVSFFISSGMQVGIIGRTGAGKSSILNA 1168
>01_06_0857 -
32507119-32507328,32507936-32508058,32508194-32508262,
32509963-32510238
Length = 225
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+L+D L + G+ + L+G NGCGKS+LL
Sbjct: 63 VLKDCSLRVPPGQLWMLLGPNGCGKSTLL 91
>04_04_1331 - 32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ +D L++ GR LVG +G GKS+++A
Sbjct: 1036 QIFKDFNLKIQAGRSQALVGASGSGKSTVIA 1066
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
+LQ L + G+ LVG +GCGKS++++
Sbjct: 396 ILQGFSLSIPAGKVVALVGSSGCGKSTVIS 425
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
+L L + G+R LVG +G GKSS+LA
Sbjct: 1011 ILDGFSLVIEPGQRVALVGPSGAGKSSVLA 1040
>05_07_0003 + 26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ ++ L + G+ LVG +GCGKS+++A
Sbjct: 1067 QIFRNLSLRIPSGKMVALVGESGCGKSTVIA 1097
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 392 EKLAILISLERGCTASDPVQERASEFIFASASSLRHNA--SSAVSSRSP 252
EKL LIS+ C +DP + + + R A SS S RSP
Sbjct: 635 EKLGALISIAAACVVADPARRPTTPEVLRMVREARAEAMSSSNSSDRSP 683
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
+L+ L + G+ LVG +GCGKS++++
Sbjct: 374 ILRSFSLSIPAGKVVALVGSSGCGKSTVIS 403
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 392 EKLAILISLERGCTASDPVQERASEFIFASASSLRHNASSAVSS 261
E+L ++ + CT+ P + + E + LRH+AS + +S
Sbjct: 584 EELVQMLQIAMACTSRSPDRRPSMEDVIRMIEGLRHSASESRAS 627
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 409 SELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
S L+D L++ G + + G+ G GKSSLL++
Sbjct: 410 SPTLKDVELKVKRGMKVAICGMVGSGKSSLLSS 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,313
Number of Sequences: 37544
Number of extensions: 388653
Number of successful extensions: 1073
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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