Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20255
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60790.1 68418.m07627 ABC transporter family protein similar ... 91 8e-19
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 51 1e-06
At1g64550.1 68414.m07317 ABC transporter family protein similar ... 47 1e-05
At5g09930.1 68418.m01148 ABC transporter family protein 39 0.004
At5g64840.1 68418.m08157 ABC transporter family protein 38 0.006
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 31 0.66
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 31 0.87
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 30 1.5
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 30 1.5
At4g33460.1 68417.m04753 ABC transporter family protein ABC-type... 30 2.0
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 29 2.7
At3g59140.1 68416.m06593 ABC transporter family protein putative... 29 2.7
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 29 2.7
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 29 2.7
At5g10930.1 68418.m01268 CBL-interacting protein kinase 5 (CIPK5... 29 3.5
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 29 3.5
At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK... 29 4.6
At5g02270.1 68418.m00150 ABC transporter family protein NBD-like... 28 6.1
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta... 28 6.1
At1g49470.1 68414.m05544 expressed protein contains Pfam profile... 28 6.1
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 28 8.1
>At5g60790.1 68418.m07627 ABC transporter family protein similar to
ABC transporter homolog PnATH GI:7573600 from [Populus
nigra]
Length = 595
Score = 91.1 bits (216), Expect = 8e-19
Identities = 39/60 (65%), Positives = 51/60 (85%)
Frame = +1
Query: 328 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
R+CTG L HP+SRDI+I + S+TF+G +L+ D++LELN GRRYGL+GLNGCGKS+LL A
Sbjct: 54 RTCTGVLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKSTLLTA 113
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/85 (37%), Positives = 54/85 (63%)
Frame = +3
Query: 486 KIIIACCLGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCE 665
K + +GRRE+PIP+ +DI+HL+ E+ A+D ++L+ V+ DEER++LEK E+L +
Sbjct: 107 KSTLLTAIGRREIPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQQD 166
Query: 666 DDESQEH*WMYTIVWTI*APTRQKR 740
D + +Y + + A T +KR
Sbjct: 167 DGGGERLQSIYERLDAMDAETAEKR 191
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 686 LMDVYDRLDDLSADTAEARAANILHGL 766
L +Y+RLD + A+TAE RAA IL GL
Sbjct: 173 LQSIYERLDAMDAETAEKRAAEILFGL 199
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1
Query: 367 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+DI I +FS++ G ELL++ + ++ G+RYGL+G NG GKS+LL
Sbjct: 161 KDITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLL 205
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +3
Query: 507 LGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEML 653
L R++P+P++ID+ + +E+ +K+AL V+ +EE VKL + AE L
Sbjct: 208 LAWRKIPVPKNIDVLLVEQEVVGDEKSALNAVVSANEELVKLREEAEAL 256
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 686 LMDVYDRLDDLSADTAEARAANILHGL 766
L ++YDRL L +D AEA+A+ IL GL
Sbjct: 280 LAELYDRLQILGSDAAEAQASKILAGL 306
>At1g64550.1 68414.m07317 ABC transporter family protein similar to
ABC transporter protein GB:AAF31030 GI:6899653 from
[Leishmania major]
Length = 715
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +1
Query: 367 RDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
RDI + NF+++ G +L+ D + L+ GR YGLVG NG GK++ L
Sbjct: 173 RDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFL 217
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 528 IPEHIDIFHLTREMPASDKTALQCVMEVDEERVK-LEKLAEMLAHCEDDE 674
IP + I H+ +E+ TALQCV+ D ER K LE+ ++LA + E
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETE 277
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 686 LMDVYDRLDDLSADTAEARAANILHGLA 769
L ++Y RLD + A TAEARAA+IL GL+
Sbjct: 300 LEEIYKRLDAIDAYTAEARAASILAGLS 327
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +1
Query: 364 SRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
S +++ N S ++ G +L+D E+ G + GL+G+NG GK++ L
Sbjct: 81 SSGVRLENISKSYEGITVLKDVTWEVKKGEKVGLIGVNGAGKTTQL 126
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 373 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+ + N F L L + G + ++G NGCGKS+LL
Sbjct: 411 VTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLL 453
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 364 SRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
S +K+ N ++ G +L+D E+ G + GLVG+NG GK++ L
Sbjct: 95 SSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVGLVGVNGAGKTTQL 140
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 373 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+ + N F L + L + G + ++G NGCGKS+LL
Sbjct: 425 VNVKNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLL 467
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 DIKIANFSITFY---GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
DI++ + S T+ G ++ +D L + G+ LVG +G GKS++++
Sbjct: 1026 DIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVIS 1073
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ +D L G+ LVG +GCGKSS+++
Sbjct: 1040 QIFRDLSLRARAGKTLALVGPSGCGKSSVIS 1070
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ QD L + G+ LVG +G GKS+++A
Sbjct: 1064 QIFQDLCLSIRAGKTIALVGESGSGKSTVIA 1094
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 412 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
++ QD L + G+ LVG +G GKS+++A
Sbjct: 1058 QIFQDLCLSIRAGKTVALVGESGSGKSTVIA 1088
>At4g33460.1 68417.m04753 ABC transporter family protein ABC-type
transport protein sll1623 -Synechocystis,PIR2:S74812
Length = 271
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
+L+D + G+ + ++G NGCGKS+LL
Sbjct: 59 ILRDCSFRIPSGQLWMILGPNGCGKSTLL 87
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
DI++ + S T+ ++ +D L + G+ LVG +G GKS++++
Sbjct: 984 DIELCHISFTYQTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVIS 1031
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 373 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAA 507
IK A+FS GS L++ LE+ G + + G G GKS+LLAA
Sbjct: 603 IKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAA 649
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 358 PRSRDIKIANFSITFYGSELLQDTLLELNC----GRRYGLVGLNGCGKSSLL 501
P +I I N + YG L L L C G + G+VG GCGKS+L+
Sbjct: 1214 PSRGEITICNLQVR-YGPHLPM-VLHGLTCTFPGGLKTGIVGRTGCGKSTLI 1263
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
DI++ + S T+ ++ +D L + G+ LVG +G GKS++++
Sbjct: 1031 DIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVIS 1078
>At5g10930.1 68418.m01268 CBL-interacting protein kinase 5 (CIPK5)
identical to CBL-interacting protein kinase 5
GP|9280632|gb|AAF86504 [Arabidopsis thaliana]
Length = 445
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 370 DIKIANFSITFYGSELLQDTLLELNCG 450
D+KI++F ++ ++LQD LL CG
Sbjct: 148 DLKISDFGLSALPEQILQDGLLHTQCG 174
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 358 PRSRDIKIANFSITFYGSELLQDTLLELNC----GRRYGLVGLNGCGKSSLL 501
P +I I N + YG L L L C G + G+VG GCGKS+L+
Sbjct: 1236 PCRGEITICNLQVR-YGPHLPM-VLRGLTCTFRGGLKTGIVGRTGCGKSTLI 1285
>At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK25)
identical to CBL-interacting protein kinase 25
[Arabidopsis thaliana] gi|17646697|gb|AAL41008
Length = 488
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 370 DIKIANFSITFYGSELLQDTLLELNCG 450
D+K+++F ++ ++LQD LL CG
Sbjct: 178 DLKVSDFGLSALPEQILQDGLLHTQCG 204
>At5g02270.1 68418.m00150 ABC transporter family protein NBD-like
protein POP, Arabidopsis thaliana, EMBL:AF127664
Length = 328
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 415 LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
L++D + LN R LVG NG GK+++L
Sbjct: 37 LIEDFSITLNSSDRCLLVGSNGAGKTTIL 65
>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
putative similar to glutathione-conjugate transporter
AtMRP4 GI:2959767 from [Arabidopsis thaliana]
Length = 1539
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 325 ARSCTGSLAVHPRSRDIKIANFSITFYGSE-LLQDTLLELNCGRRYGLVGLNGCGKSSLL 501
++ C G++AV +IK +FS E +++ E+ G +VG G GKSSLL
Sbjct: 630 SQGCDGNVAV-----EIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLL 684
Query: 502 AA 507
A+
Sbjct: 685 AS 686
>At1g49470.1 68414.m05544 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 302
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -3
Query: 719 SNRPDDRIHPSMLL*FIIFTVG*HFCELLEFDSLLVNLHDALKCSL 582
S +PD+ H SM L IIF FCEL L L L S+
Sbjct: 78 SLKPDNLEHASMFLHLIIFACFALFCELTLCSDLFSGLIGVLSASV 123
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 DIKIANFSITFYGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 504
DI++ + S T+ ++ +D + G+ LVG +G GKS++++
Sbjct: 983 DIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVIS 1030
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,394
Number of Sequences: 28952
Number of extensions: 303350
Number of successful extensions: 848
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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