Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   4.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   8.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   8.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   8.1  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 3   ARADLLLIYIPLLHTCINIWETLGRDKSKLVEELNDLRKRGMKVD 137
           +R +  L  I  L  C     T+  D S ++E L DL+K+ +KVD
Sbjct: 418 SRVNSELSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIKVD 462


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 21  LIYIPLLHTCINIWETLGRDKSKLVEELNDLRKRGMKVDSVPTL 152
           L+Y   + + I   E + R    L+EELN+L K  ++V+S   L
Sbjct: 427 LLYQEQIQSSIKDMENVFRKNEYLMEELNEL-KNNLEVESSKVL 469


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 544 NNIYFY*ENCKKLQTHNAILVLRDSIYRV 630
           NNI++  EN KK+  H       D +Y +
Sbjct: 903 NNIHYEGENTKKISVHVVSQRCEDEVYEI 931


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 129 SFLVCEGHLVLQLTSIYLYRVFPKC 55
           S  +C G +    T+ YL R+ PKC
Sbjct: 2   SIAICGGGIAGLSTAFYLARLIPKC 26


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 483 SNIESYSEMILYIYQSAFRDKFICRRQ 403
           ++I+     ILY YQ AFRD F C+ Q
Sbjct: 466 TSIKKGEPKILYPYQLAFRDGF-CQEQ 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,828
Number of Sequences: 5004
Number of extensions: 54623
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)