Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0618 - 26647966-26648274,26648370-26648572,26648677-266487...    36   0.032
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438...    28   8.4  

>04_04_0618 -
           26647966-26648274,26648370-26648572,26648677-26648725,
           26649167-26649256,26649767-26649916
          Length = 266

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -1

Query: 279 WSLHFR---TLNHNNNDDSFKYLSVYVIIY*CLIITWCLKCXXXXXXXXXXXPSFLVCEG 109
           W + FR       +N +  F Y ++ +++Y  ++  +C K               L+  G
Sbjct: 30  WCISFRGGLAFEADNKNLIFNYAAITIMLYESIVTRYCNKLDEYMVCKLYQVHPVLMLIG 89

Query: 108 HLVLQLTSIYLYRVFPK 58
           +++L   +I +Y++FPK
Sbjct: 90  YIILGSEAIMIYKIFPK 106


>03_01_0004 +
           41829-42203,42376-42474,42699-42743,43604-43741,
           43852-44157,44779-45689,45826-46093
          Length = 713

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 57  IWETLGRDKSKLVEELNDLRK---RGMKVDSVPTLMEAVDTL 173
           IW TLG+   +LV +L  LRK     ++ D+V T ++ +DTL
Sbjct: 598 IWHTLGKKTKQLVADLRTLRKLLDYLVRYDAV-TYLKYLDTL 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,770
Number of Sequences: 37544
Number of extensions: 279553
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)