Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6127| Best HMM Match : Avidin (HMM E-Value=0)                       29   2.8  
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           29   4.9  
SB_1085| Best HMM Match : Metallothio (HMM E-Value=1.1)                29   4.9  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30  IPLLHTCINIWETLGRDKSKLVEELNDLRKR-GMKVDSVPTLMEAVDT 170
           IPLL TC  +   LG DK KL + L ++++  G++++   TL E   T
Sbjct: 281 IPLLSTCSELRWKLGMDKKKLEKRLIEVQRNCGIEMEHAFTLRELAVT 328


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 9/27 (33%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 84  IYLYRVFPKCLC-KCEAMVCISGVNQL 7
           +++Y+V+ +C+C +C   VC+ GV ++
Sbjct: 285 VHVYKVYARCVCTRCTRGVCVKGVREV 311


>SB_6127| Best HMM Match : Avidin (HMM E-Value=0)
          Length = 389

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 45  TCINIWET--LGRDKSKLVEELNDLRKRGMKVDSVPTLMEAVDTL 173
           TC++ W++  +GRD     E++   RK+G+   S+PT+     TL
Sbjct: 169 TCVDKWKSTMIGRDVFTRYEQVLGPRKQGIDPTSLPTISTDFKTL 213


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 33  PLLHTCINIWETLGRDKSKLVEELNDLRKR 122
           P  + C  +W+TLG++ SK +++L +   R
Sbjct: 210 PHFNYCSEVWDTLGQENSKRLQKLQNRAAR 239


>SB_1085| Best HMM Match : Metallothio (HMM E-Value=1.1)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 111 GHLVLQLTSIYLYRVFPKCLC-KCEAMVCISGVNQL 7
           G  V  +  + +Y+V+ +C+C +C    C+ GV ++
Sbjct: 3   GACVQGVCEVRVYKVYERCVCTRCTRGACVQGVREV 38



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 111 GHLVLQLTSIYLYRVFPKCLC-KCEAMVCISGVNQL 7
           G  V  +  + +Y+V+ +C+C +C    C+ GV ++
Sbjct: 29  GACVQGVREVRVYKVYERCVCTRCTRGACVQGVREV 64


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 350 PYKIRLPHLNTKNNKGHFHNY 288
           PY  RL  L T NN  H HNY
Sbjct: 381 PYLPRLQRLTTPNNLPHTHNY 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,145
Number of Sequences: 59808
Number of extensions: 364923
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)