Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81529-6|CAB04293.1|  209|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    30   1.9  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    29   3.3  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z81529-6|CAB04293.1|  209|Caenorhabditis elegans Hypothetical
           protein F35E8.8 protein.
          Length = 209

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 63  ETLGRDKSKLVEELNDLRKRGMKVDSVPTLMEAVDT 170
           + LGR+KS L  ++ +++    KV S+P + + ++T
Sbjct: 168 DLLGREKSDLFNDVPEMKAHSEKVQSIPQIKKWIET 203


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 622  IWNPLKLISHC--VFVIFYSFLNKNKCYSYIVNS 527
            ++N +  I HC  V+  F+S L  NKC +YI  S
Sbjct: 1434 LFNQVDEICHCDLVYTFFHSILRDNKCDTYIDES 1467


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 622  IWNPLKLISHC--VFVIFYSFLNKNKCYSYIVNS 527
            ++N +  I HC  V+  F+S L  NKC +YI  S
Sbjct: 1434 LFNQVDEICHCDLVYTFFHSILRDNKCDTYIDES 1467


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 413 AEDNRERGRRFKHTLQRGY*SPYKIRLPHLNTKNNKGHFHNYIKAGVYIS 264
           A  NRER RR   T+ +        RL  L  K+ +   HNY+K G YIS
Sbjct: 746 AHYNRERVRRGA-TVDKTVCKKNLGRLTRLYLKSEQERQHNYLKDGPYIS 794


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 625  DIWNPLKLISHCVFVIFYSFLNKNKCYSYIVNSYNNIILKAIQ 497
            DI+ PL L +  +F  F +    N  Y+Y VN+  ++  K I+
Sbjct: 3384 DIYVPLSLFTSSLFFSFSNLQFHNPMYNYSVNTIMHLFGKTIK 3426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,745
Number of Sequences: 27780
Number of extensions: 297587
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)