Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    28   0.10 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    28   0.10 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.71 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.71 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 344 KIRLPHLNTKNNK-GHFHNYIKAGVYI 267
           ++ +P L   N K GHFHN I   VYI
Sbjct: 114 RVWMPDLFFSNEKEGHFHNIIMPNVYI 140


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 344 KIRLPHLNTKNNK-GHFHNYIKAGVYI 267
           ++ +P L   N K GHFHN I   VYI
Sbjct: 114 RVWMPDLFFSNEKEGHFHNIIMPNVYI 140


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 148 VGTESTFIPRLRRSFSSSTNFDLSLPSVSQMFM 50
           VG+E + IPR+      S+N D+ +PS   + M
Sbjct: 798 VGSEDSVIPRILYLTWYSSNGDIKVPSTKVLAM 830


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 139 ESTFIPRLRRSFSSSTNFDLSLPSVS 62
           ESTFIP  RR +S  T  D++  SV+
Sbjct: 664 ESTFIPEERRIYSPITFQDVARRSVA 689



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 119 TRNEGGFRAYLNGSSRHFRHH 181
           TRN   F + L+ + +HFR H
Sbjct: 711 TRNSEMFSSLLSDTEQHFRQH 731


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 252 HNNNDDSFKYLSVYVIIY 199
           +NN DDSF+ L+    +Y
Sbjct: 213 YNNADDSFQRLTSSTFVY 230


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 136 IPCLP*WKQSTL*TPCNY 189
           I C+  W+  ++ TP NY
Sbjct: 53  ITCIVIWRNPSMQTPTNY 70


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 60  KCLCKCEAMVC 28
           K LCKC+A  C
Sbjct: 668 KTLCKCDAQNC 678


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 83  FISTECFPNVYASVKQ 36
           FI+ E FP+VY+  ++
Sbjct: 188 FIAMETFPSVYSKTRR 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,167
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)