Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20254
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41160.1 68418.m05003 purine permease-related similar to puri...    28   7.0  
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    27   9.3  
At5g38700.1 68418.m04679 expressed protein                             27   9.3  

>At5g41160.1 68418.m05003 purine permease-related similar to purine
           permease [Arabidopsis thaliana] GI:7620007; contains
           Pfam profile PF03151: Domain of unknown function, DUF250
          Length = 358

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 696 SVMLLYFHQNLLN**CQKITYFNSIYGIP*N*YRIVCL*FFTVFLIKIN 550
           SV LLY   +  +  C     FN ++    N  +I CL FF+V  + I+
Sbjct: 119 SVGLLYLSASTYSILCASQLAFNGVFYYYINSQKITCLIFFSVLFLSIS 167


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 54  NIWETLGRDKSKLVEELNDLRKRGMKVDSVPTLMEAV 164
           N  + +GRDK +LVE  N+   R M +D+ P + + +
Sbjct: 472 NSQKMIGRDKDRLVELANEF-SRSMGLDNPPAIPKLI 507


>At5g38700.1 68418.m04679 expressed protein
          Length = 161

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 279 WSLHFRTLNHNNNDDSFKYLSVY 211
           +S H + LNH+N+ D+ +YL+ Y
Sbjct: 24  FSKHLKALNHHNSVDNNRYLTRY 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,292
Number of Sequences: 28952
Number of extensions: 255946
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)