Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20253
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    31   0.13 
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   4.9  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 352 RE*SKNNHASPDATQTEKL*REK*KQTFASGADSDKHSQRSREEGH 489
           RE  +    SPDA + EK  ++   + + +G  S +H   ++EEGH
Sbjct: 136 REDVEEEEESPDAVEKEK--KDVASEPYVNGVQSQEHLPSAKEEGH 179


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 624 CLHLRSVFFLFRRFKLGRQRCTGHLRGV 541
           CL+ R      + F+L R+   GHLRGV
Sbjct: 270 CLYQRLNLLSQQTFQLSRESWLGHLRGV 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,903
Number of Sequences: 5004
Number of extensions: 47967
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)