Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20253
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    31   0.73 
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    28   6.8  
07_01_1049 - 9184559-9184888,9186534-9187003,9187279-9187342           28   9.0  

>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 268 RGSGQSARVPENPLFEREKLIEI*SD*RRE*SKNNHASPDATQTEKL*REK*KQTFASGA 447
           +G  QS RVP++PL  REK  +   + R+   K++H+   + ++             S  
Sbjct: 135 KGDRQSQRVPKSPLLTREKERKHKDEHRKSYPKDSHSKEQSRRS--------PSRHHSSQ 186

Query: 448 DSDKHSQRSREEG 486
           D  +H  RSR+ G
Sbjct: 187 DHARHHSRSRDTG 199


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 215 AEPPSGLRPRGQRPPARNEAPVSLLEYRKIPSLKGKSLLKSNQTDAESDPKIT 373
           AEPP G+  R + P  R  +   LL++ +   LK +++ ++ Q   +   + T
Sbjct: 93  AEPPGGVASRSRSPAMRRTSSHRLLQFSQ--ELKAEAMARARQFSQDLTKRFT 143


>07_01_1049 - 9184559-9184888,9186534-9187003,9187279-9187342
          Length = 287

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 513 AAGEGCQCVGPHGGGQCT 566
           AAGEGC   G  GGG C+
Sbjct: 36  AAGEGCGLCGADGGGCCS 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,715,704
Number of Sequences: 37544
Number of extensions: 386122
Number of successful extensions: 1023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)