Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20253
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    28   8.0  

>U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical
           protein F47B3.7 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 210 SHYSWTHWRRHCEPKLNHRFGNISLTES 127
           +HY WT+W  H  P +N   G I+L E+
Sbjct: 228 THYQWTNWPDHGAPPIN--MGAINLIEA 253


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 597 EKRHSEDGDT*ETKASQQTVETHTHAHYSGKLG 695
           EKRH ED D    K     ++  + A Y GK G
Sbjct: 40  EKRHKEDRDAWRLKDFANAIDKMSRAGYKGKHG 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,532
Number of Sequences: 27780
Number of extensions: 286172
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)