Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20253
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -2

Query: 687 FRSNGHECGSPRFAGWLWFLRCLHLRSVFFLFRRFKLGRQRCTGHLRGVRRTDTLHQLL- 511
           +    +E   P+ +GW      +H    F  +++ +    +  GH    R   T   +L 
Sbjct: 204 YTDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFRAGPTPGTILK 263

Query: 510 KLC 502
           KLC
Sbjct: 264 KLC 266


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 664 TLMPITPENLARIAR 708
           +L+P +PEN A +AR
Sbjct: 343 SLLPYSPENQAVVAR 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 254  PPARNEAPVSLLEYRKIPSLKGKSLLKSNQTDAESDPK 367
            PP R   PV    Y     +K  ++++S ++ +  DP+
Sbjct: 1648 PPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTWDPR 1685


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -2

Query: 687 FRSNGHECGSPRFAGWLWFLRCLHLRSVFFLFRRFKLGRQRCTGHLRGVRRTDTLHQLL- 511
           ++ N    G  + +GW      +H    F  +++ +    +  GH    R   T   +L 
Sbjct: 119 YQRNPSVVGRKKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFRAGPTPGTILK 178

Query: 510 KLC 502
           KLC
Sbjct: 179 KLC 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,836
Number of Sequences: 438
Number of extensions: 4038
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)