Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20251
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 27 2.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.6
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 26 6.6
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 6.6
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 6.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 6.6
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 25 8.7
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 8.7
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 25 8.7
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 275 EAIVNENV-SLVISRQLLTDVSTHLALL-ADNVSQEVSHFALDVIQPRVISFEEQ 433
E+I+NE V I+ +L + +T+ A++ +N S + H ALD+IQ R+ EE+
Sbjct: 422 ESIMNEAVCDQKITIRLPINSNTNEAVVECENKSMQSKH-ALDIIQERIKDLEEK 475
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 408 GCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDLIIL 244
GC+ + KW + K +L S L+ +R+T +L + N + + IIL
Sbjct: 411 GCVLRNTKWVIGVVVFTGDDTKIMLNSGAPPLKRSRITRNL---NWNVYLNFIIL 462
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 371 VKHYQPAVLSVCSHLSRVALKS-LGSHFH 288
++ Y AVLS+CS L+R ++ S + ++H
Sbjct: 155 IEQYLHAVLSLCSELARQSVNSVISGNYH 183
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +3
Query: 168 NSGGLHKDQAEKYR---NVLMEILKSTE 242
NSG +H +Q E+Y N+ +++L+ T+
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTD 724
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = -3
Query: 339 VLTSVKSCLEITRLTFSLTIASMNAFNDLIILVLYFLVSP*EHCDTFQLDLYANHPN 169
+L C+ +TF T N N + I LYF + + L L HPN
Sbjct: 332 LLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPN 388
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 132 LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 245
+Q R+YL L LH E NVL+E + +Q
Sbjct: 88 MQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQ 125
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 292 FINNRFYECFQ*LDNSCSVLFSISI 218
F RFYE F L + CS+ F I+I
Sbjct: 212 FFRRRFYEWFFVLHHMCSIGFLITI 236
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 8.7
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 188 RSS*KVSQCSYGDTKKYRTRIIKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNV 367
R + + + YG+ KK R + LKAF+ NVS V LL T+ A +A NV
Sbjct: 44 RGTISMPKIGYGNNKKTRYCMPNGLKAFLV----RNVSDV--ELLLMHNKTYAAEIASNV 97
Query: 368 S 370
S
Sbjct: 98 S 98
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 644 CYRPKQPTSNCRYITKFAMQSLDYRRN 724
C R ++P S R I KF LD+ N
Sbjct: 63 CMRNEEPASKQREIEKFLRTDLDHSEN 89
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 308 ISRQLLTDV-STHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 484
+ R LTD+ + H+A + ++ H ++ + P + V + + D++ N
Sbjct: 174 VDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVE 233
Query: 485 WKEAANVLLEYHWKLDRNNIQLITNWKRT 571
E + R ++ ++ + K+T
Sbjct: 234 TVEELTPFVRDRRATYRQSLSVLKHVKKT 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,783
Number of Sequences: 5004
Number of extensions: 62122
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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