Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20251
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    83   2e-16
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    29   3.9  
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285...    29   5.2  

>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/77 (50%), Positives = 53/77 (68%)
 Frame = +2

Query: 278 AIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHL 457
           A+V++ V LV+SRQLL   +  L  L     +EV+H+AL  IQPRV+SFEEQV  IR+ L
Sbjct: 76  AVVSDEVPLVVSRQLLQTFAQELGRLEPEAQKEVAHYALTQIQPRVVSFEEQVVVIREKL 135

Query: 458 ADIYERNQNWKEAANVL 508
           A++YE  Q W +AA +L
Sbjct: 136 AELYESEQQWSKAAQML 152



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +1

Query: 511 GIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYK 690
           GI L++G +      KL   ++IARLYLE DD V AEAF+N+AS L   +  E L + YK
Sbjct: 154 GIDLDSGIRMLDDTNKLSKCVQIARLYLEDDDSVNAEAFINKASFLVTNSHQELLNLQYK 213

Query: 691 VCYAE-FRL*KEFIEAA 738
           VCYA    L + F+EAA
Sbjct: 214 VCYARILDLKRRFLEAA 230


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 342 CVLTSVKSCLEITRLTFSLTIASMNAFNDLIILVLYFLVSP*EHCDTFQLDL-YANHP 172
           CV+ +  S + ++    SLTIAS    + ++ + +Y L +    C T +L + YA  P
Sbjct: 27  CVILNSMSWVTVSSTVVSLTIASAGQRSSMMSIAIYLLATSLTACLTVKLVVEYAKAP 84


>08_01_0319 +
           2848751-2848762,2849516-2850449,2850476-2851234,
           2851793-2851850,2851900-2852179
          Length = 680

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 348 HCWLIMFHRRFPTLHLMLYNPELFHLKNRWP 440
           H WL++ H    T   ML   +LFHL    P
Sbjct: 481 HVWLLLAHAGMETFPEMLQRRQLFHLPTEEP 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,651
Number of Sequences: 37544
Number of extensions: 364231
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)