Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20251
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15362| Best HMM Match : LTXXQ (HMM E-Value=1.9) 30 1.7
SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0) 30 2.3
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0) 29 4.0
SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07) 29 4.0
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19) 28 7.0
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 9.2
>SB_15362| Best HMM Match : LTXXQ (HMM E-Value=1.9)
Length = 126
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 141 VRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSSH 260
+ Y++ L G+ ++ AEK RN L + + EQE ++H
Sbjct: 18 LEMYVAVLNTQKGVLQEDAEKLRNELHNVCRLIEQEKTAH 57
>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 546
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 364 CFTG--GFPLCT*CYTTQSYFI*RTGGQYQTALSRYLRAKSKLEGSC*CFIGIPLETGQ 534
C TG GFPLC C + S F T GQY + R E F G P TG+
Sbjct: 80 CMTGYYGFPLCIKCACSNSGF--GTCGQYGECICRPGYTGRSCESCAKGFYGFPHCTGE 136
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 381 PTLHLMLYNPELFHLKNRWPVSDST*QISTSEIKTGRKLLMFYWNTIGNW 530
P LHL P + +L W T +S +KT R + +FY + +W
Sbjct: 619 PILHLFHPTPAVCYLLQPWRYLTCTACVSILFLKTNRLVNVFYTEPVPHW 668
>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1846
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -3
Query: 420 EITLGCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDLIILV 241
+IT+GC+ + A W LS S+A V T S + ++ I++M +F + I +
Sbjct: 1101 KITVGCLPAGATWIAWLICLSGSAASSVFTVFYSLVWGAEISNQWLISTMVSFVEDIFFI 1160
>SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07)
Length = 210
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +1
Query: 457 SRYLRAKSKLEGSC*CFIGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQA 618
S YL A C F+GI L GQKQ V+ Y A +YL +DDP+ A
Sbjct: 81 SLYLNASVSFTFICAPFLGINLSGGQKQ-RVNLARAVYFN-ADVYL-LDDPLSA 131
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 323 LTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADI 466
L D +T L L DN EV+ + I R + E +A +QHLAD+
Sbjct: 2078 LNDAATSLDALCDNA--EVTQAEVKDINKRWAAVLEGMADRKQHLADV 2123
>SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 432 CSS-NEITLGCITSSAKWETSCETLSASSAKCVLTSVKS-CLEITRLTFSLTIASMNAFN 259
CS+ NE T + +S TLS+ + KCV VKS C + RL S + M +
Sbjct: 123 CSALNENQAPSATKPPQKSSSSFTLSSDALKCVGNFVKSRCKSLNRLRASEVVLWMRGVD 182
Query: 258 DLIIL 244
++L
Sbjct: 183 RALLL 187
>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
Length = 1562
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 429 SSNEITLGCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDLI 250
SSN +L + S A W + L SS + + C TR FS AS++A + +
Sbjct: 629 SSNSDSLSSLRSRASWRLLSDVL-GSSMVSLSVATTPCSSWTRSVFSWMTASISATDPIA 687
Query: 249 IL 244
L
Sbjct: 688 SL 689
>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = -2
Query: 667 RWLFRPVAMRLC*RMPQLAPDRPLQGTVWLSLGTFPVCNQLNIVSVQFPMVFQ*NISSFL 488
+WL R +LC + ++ D+ + + F + L +++++ PM + + +
Sbjct: 110 KWLTRQQLSKLCKDLDEIWTDQGVGDVIIFRWTQFLMDEALEVLNIKSPMTVRFHRQQSI 169
Query: 487 PVLISLVD 464
P+ SLVD
Sbjct: 170 PLDSSLVD 177
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 535 KQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQ 678
K ++ +LE Y K + L + ++ V ASL+QAE T ++LQ
Sbjct: 11 KVKNMQQELEQYKKELQESLSISTVMEQTLQVKEASLIQAEETLKELQ 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,961,186
Number of Sequences: 59808
Number of extensions: 448391
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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