Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20251
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093007-1|AAH93007.1| 406|Homo sapiens COP9 constitutive photo... 130 7e-30
BC009292-1|AAH09292.1| 406|Homo sapiens COP9 constitutive photo... 130 7e-30
BC004302-1|AAH04302.1| 406|Homo sapiens COP9 constitutive photo... 130 7e-30
AK223178-1|BAD96898.1| 406|Homo sapiens COP9 signalosome subuni... 130 7e-30
AK001210-1|BAA91555.1| 394|Homo sapiens protein ( Homo sapiens ... 130 7e-30
AF100757-1|AAD43021.1| 405|Homo sapiens COP9 complex subunit 4 ... 130 7e-30
U72395-1|AAB68948.1| 890|Homo sapiens MIP protein. 31 5.8
U72069-1|AAB58254.1| 890|Homo sapiens karyopherin beta2 protein. 31 5.8
U70322-1|AAC50723.1| 890|Homo sapiens transportin protein. 31 5.8
BC040340-1|AAH40340.1| 890|Homo sapiens transportin 1 protein. 31 5.8
>BC093007-1|AAH93007.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 128 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 187
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 188 KVCYARVLDYRRKFIEAAQ 206
Score = 126 bits (304), Expect = 8e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEE
Sbjct: 42 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 101
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 102 QVASIRQHLASIYEKEEDWRNAAQVLV 128
Score = 36.7 bits (81), Expect = 0.088
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQE 248
+VRQ L++L NS G HKD A KYR +L + ++ + E
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAE 40
>BC009292-1|AAH09292.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 128 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 187
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 188 KVCYARVLDYRRKFIEAAQ 206
Score = 126 bits (304), Expect = 8e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEE
Sbjct: 42 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 101
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 102 QVASIRQHLASIYEKEEDWRNAAQVLV 128
Score = 36.7 bits (81), Expect = 0.088
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQE 248
+VRQ L++L NS G HKD A KYR +L + ++ + E
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAE 40
>BC004302-1|AAH04302.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 128 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 187
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 188 KVCYARVLDYRRKFIEAAQ 206
Score = 126 bits (304), Expect = 8e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEE
Sbjct: 42 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 101
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 102 QVASIRQHLASIYEKEEDWRNAAQVLV 128
Score = 36.7 bits (81), Expect = 0.088
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQE 248
+VRQ L++L NS G HKD A KYR +L + ++ + E
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAE 40
>AK223178-1|BAD96898.1| 406|Homo sapiens COP9 signalosome subunit 4
variant protein.
Length = 406
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 128 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 187
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 188 KVCYARVLDYRRKFIEAAQ 206
Score = 126 bits (304), Expect = 8e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEE
Sbjct: 42 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 101
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 102 QVASIRQHLASIYEKEEDWRNAAQVLV 128
Score = 36.7 bits (81), Expect = 0.088
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQE 248
+VRQ L++L NS G HKD A KYR +L + ++ + E
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAE 40
>AK001210-1|BAA91555.1| 394|Homo sapiens protein ( Homo sapiens
cDNA FLJ10348 fis, clone NT2RM2001065. ).
Length = 394
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 116 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 175
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 176 KVCYARVLDYRRKFIEAAQ 194
Score = 126 bits (303), Expect = 1e-28
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRV+SFEE
Sbjct: 30 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVVSFEE 89
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 90 QVASIRQHLASIYEKEEDWRNAAQVLV 116
>AF100757-1|AAD43021.1| 405|Homo sapiens COP9 complex subunit 4
protein.
Length = 405
Score = 130 bits (313), Expect = 7e-30
Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 IGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYY 687
+GIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+Y
Sbjct: 127 VGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHY 186
Query: 688 KVCYAE-FRL*KEFIEAAQ 741
KVCYA ++FIEAAQ
Sbjct: 187 KVCYARVLDYRRKFIEAAQ 205
Score = 126 bits (304), Expect = 8e-29
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 251 IKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEE 430
+++LKAF+EA+VNENVSLVISRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEE
Sbjct: 41 LEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 100
Query: 431 QVASIRQHLADIYERNQNWKEAANVLL 511
QVASIRQHLA IYE+ ++W+ AA VL+
Sbjct: 101 QVASIRQHLASIYEKEEDWRNAAQVLV 127
Score = 37.1 bits (82), Expect = 0.067
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 132 LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQE 248
+ +VRQ L++L NS G HKD A KYR +L + ++ + E
Sbjct: 1 MAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAE 39
>U72395-1|AAB68948.1| 890|Homo sapiens MIP protein.
Length = 890
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 509 LEYHWKLDRNNIQLITNWKRT*R*PDCTLKWTIRCKLRHSSTEP 640
+EY WK D +Q I + + PD T++ T++ KL + P
Sbjct: 1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP 44
>U72069-1|AAB58254.1| 890|Homo sapiens karyopherin beta2 protein.
Length = 890
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 509 LEYHWKLDRNNIQLITNWKRT*R*PDCTLKWTIRCKLRHSSTEP 640
+EY WK D +Q I + + PD T++ T++ KL + P
Sbjct: 1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP 44
>U70322-1|AAC50723.1| 890|Homo sapiens transportin protein.
Length = 890
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 509 LEYHWKLDRNNIQLITNWKRT*R*PDCTLKWTIRCKLRHSSTEP 640
+EY WK D +Q I + + PD T++ T++ KL + P
Sbjct: 1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP 44
>BC040340-1|AAH40340.1| 890|Homo sapiens transportin 1 protein.
Length = 890
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 509 LEYHWKLDRNNIQLITNWKRT*R*PDCTLKWTIRCKLRHSSTEP 640
+EY WK D +Q I + + PD T++ T++ KL + P
Sbjct: 1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,204,527
Number of Sequences: 237096
Number of extensions: 2096439
Number of successful extensions: 4216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4216
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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