Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20251
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9 signal...    46   2e-05
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical...    29   4.6  

>AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9
           signalosome subunit protein 4 protein.
          Length = 412

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +2

Query: 260 LKAFIEAIVNENVSLVISRQLLTDVSTHL--ALLADNVSQEVSHFALDVIQPRVISFEEQ 433
           +K     I  E  S+V+SRQ ++ ++  L    L     + +S   L +I+ R IS+E+Q
Sbjct: 50  IKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISEGILAIIKTRTISYEDQ 109

Query: 434 VASIRQHLADIYERNQNWKEAANVLL 511
           V  +R  LA +YE+    K+AA  L+
Sbjct: 110 VCILRLMLASLYEKEGRIKDAAQALI 135


>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
           protein R07G3.3c protein.
          Length = 1316

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 111 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 245
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
           protein R07G3.3a protein.
          Length = 1982

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 111 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 245
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
           protein R07G3.3b protein.
          Length = 1987

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 111 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 245
           EI+    LQ V +  + E +N+  L KDQ E   NVL+E+ K  ++
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQE 304


>U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical
           protein T01C8.3 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 408 GCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRL 298
           GC TS       C T S  S  C+  S   C E+T +
Sbjct: 7   GCFTSPTDLPLGCSTNSRGSIFCICNSTDYCNEMTNV 43


>AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 212 CSYGDTKKYRTRIIKSLKAFIEAIVN-ENVSLVISRQLLTDVSTHLAL-LADNVSQEVSH 385
           C  G+        ++ L + I +I++  N+ +VI++    D+  HL   +   + Q    
Sbjct: 88  CCVGEAGMGIEEALEFLNSKIRSIMDYSNIQMVIAQSNAYDLLGHLQPDILKFIKQHNET 147

Query: 386 FALDVIQPRVISFEEQVASIRQHLADIYER 475
           F     Q R+I    QV  +RQ +AD  ER
Sbjct: 148 FPT-AQQQRMIDIRRQVDDVRQVMADNVER 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,520
Number of Sequences: 27780
Number of extensions: 351840
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)