Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20251
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 396 SSAKWETSCETLSASSAKCVLTSV 325
           S+    T C TL  + +KC  TSV
Sbjct: 347 STETLNTKCNTLERTPSKCSQTSV 370


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 LHKDQAEKYRNVLMEILK 233
           LH DQAE+Y+ +   +++
Sbjct: 251 LHADQAEEYKKIQQILIR 268


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +2

Query: 215 SYGDTKKYRTRIIKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFA 391
           S G+      R ++ L   +EA  N N+   I   L  D    ++   D + QEV + A
Sbjct: 93  SKGEESFPTARSLEKLLCNVEAEENYNLLEDIYETLSYDCDVDVSTFFDQLGQEVIYTA 151


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 398 HQVQSGKPPVKHYQPAVLSVCSHLSRVALK 309
           HQ    +P + +Y P VL    ++ R  L+
Sbjct: 185 HQFAPEQPDLNYYNPVVLDDMQNVLRFWLR 214


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 398 HQVQSGKPPVKHYQPAVLSVCSHLSRVALK 309
           HQ    +P + +Y P VL    ++ R  L+
Sbjct: 185 HQFAPEQPDLNYYNPVVLDDMQNVLRFWLR 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,972
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)