Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20251
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CS...    78   5e-15
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r...    31   0.61 
At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase FKB...    30   1.4  
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    27   10.0 
At3g02690.1 68416.m00260 integral membrane family protein simila...    27   10.0 

>At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CSN
           complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8,
           CSN4; identical to CSN complex subunit 4 [Arabidopsis
           thaliana] GI:18056659, COP8 [Arabidopsis thaliana]
           GI:5802627; contains Pfam profile PF01399: PCI domain;
           identical to cDNA CSN complex subunit 4 (CSN4)
           GI:18056658
          Length = 397

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +2

Query: 269 FIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIR 448
           FI+ I++++V LV+SRQLL   +  L  L     +E++ F L  IQPRV+SFEEQ   IR
Sbjct: 40  FIDHILSDDVPLVVSRQLLQSFAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIR 99

Query: 449 QHLADIYERNQNWKEAANVL 508
           + LA +YE  Q W +AA +L
Sbjct: 100 EKLAGLYESEQEWSKAAQML 119



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = +1

Query: 511 GIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYK 690
           GI L++G +    ++KL   ++IARLYLE DD V AEAF+N+AS L + + NE L + YK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180

Query: 691 VCYAE-FRL*KEFIEAA 738
           VCYA    + ++F+EAA
Sbjct: 181 VCYARILDMKRKFLEAA 197


>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1086

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/63 (30%), Positives = 38/63 (60%)
 Frame = +2

Query: 248 IIKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFE 427
           ++KS+   ++++V   V LV S+ LL + ++ ++LL D VS  V  +   ++QP  +  E
Sbjct: 623 VLKSIN-LLKSVVTYKVPLVDSKILLVE-NSRISLLKDLVSLSVFDYRSYILQPVKLYLE 680

Query: 428 EQV 436
           E++
Sbjct: 681 EEL 683


>At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase
           FKBP-type family protein similar to rof1 from
           (Arabidopsis thaliana) GI:1373396, GI:1354207; contains
           Pfam profile PF00515 TPR Domain
          Length = 164

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 580 ARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYK 690
           A+ Y+EV D + AE  +NRA  L+A+  N +++  YK
Sbjct: 99  AQSYIEVGDLISAEMDINRA--LEADPENREVKSLYK 133


>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +2

Query: 203 VSQCSYGDTKKYRTRIIKSLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVS 382
           +++ S+G T +  T+++K+L+A   A+ N N    +       +S    + A  +  E+ 
Sbjct: 220 IAKTSFGVTGENGTQVLKNLRAVQFALFNSN--RYVGVPFSNILSYKQTVKAKGLGHEID 277

Query: 383 HFALDVIQPRVISFEE 430
              L  I  R IS  E
Sbjct: 278 GLLLSFINKRKISLAE 293


>At3g02690.1 68416.m00260 integral membrane family protein similar
           to PecM protein (GI:5852331) {Vogesella indigofera} and
           PecM protein (SP:P42194) [Erwinia chrysanthemi]
          Length = 417

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 360 SASSAKCVLTSVKSCLEITRLT 295
           S+SS+ C   S  SCL ITR T
Sbjct: 12  SSSSSSCFFASPNSCLSITRRT 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,630
Number of Sequences: 28952
Number of extensions: 311959
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)