Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20249
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +3

Query: 99   EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 227
            EYPKC+ V  +       +     +R  S     KN ++  A+
Sbjct: 2443 EYPKCWQVDCNKGPDSDKEAFAAFVRELSAAFKPKNLLLSAAV 2485


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 692 LATPAWNLARRSSGLMSRISGAKIVPESYTCLTT 591
           L+TP+ + A +SSGL S +S +   P      TT
Sbjct: 129 LSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTT 162


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 66  NYFVKIIQLLDEYPKCF 116
           N   KI  L+DE+ +CF
Sbjct: 214 NLHNKICNLIDEFNECF 230


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 223 PSKTTWTTIQPRETVATHQGQRW 291
           P+ +TW+T+Q   TV +     W
Sbjct: 302 PTYSTWSTVQTPTTVMSPTINCW 324


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 378 LPHCQSSFPPTTPASVQRK-PLSSKLFPSLPKFQRVLLKSSTM 503
           +P  Q + P       Q K PLSS  +PS+    ++L+ S  M
Sbjct: 1   MPLLQETTPKRDMLDSQEKTPLSSVSYPSMFTPSQLLMASHLM 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,015
Number of Sequences: 336
Number of extensions: 4777
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)