Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20249
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   124   2e-29
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    31   0.15 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    29   0.79 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   3.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   7.3  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    26   7.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   7.3  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   9.7  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  124 bits (299), Expect = 2e-29
 Identities = 57/85 (67%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 433
           LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P K
Sbjct: 73  LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGK 132

Query: 434 TSFFQALSIPTKISKGTIEIINDVH 508
           TSFFQAL IPTKI++GTIEI +DVH
Sbjct: 133 TSFFQALGIPTKITRGTIEITSDVH 157



 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = +1

Query: 508 LLKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 687
           L+    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL     +  
Sbjct: 158 LVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAA 217

Query: 688 ANVAALSLAIGYPTIASAPHSI 753
           + + A+SL   YPTI S  HS+
Sbjct: 218 SIITAISLGANYPTILSVMHSV 239



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 28/64 (43%), Positives = 45/64 (70%)
 Frame = +3

Query: 60  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 239
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 240 DNNP 251
           ++ P
Sbjct: 68  NDMP 71


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 215 AQSHQRPPGQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLS 391
           A  H        ++ KL   + G VG +FT     EV     E+ VQ   AR GA+AP +
Sbjct: 76  ALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFT 134

Query: 392 VVIPA 406
            VIPA
Sbjct: 135 HVIPA 139


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 274 VWQQFL-EAGLLSRWSLMALRIIVFFPMSTILEPR 173
           VW   + +A     W LM + +++F  +  ILEPR
Sbjct: 155 VWSDKIRQASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 495 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 370
           +IS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +3

Query: 243 NNPASRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPAS 422
           + P +   C TS + L + +P  ++  + TNC  T + +     P+     +   +TP +
Sbjct: 524 STPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 429 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 259
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 258 S 256
           S
Sbjct: 195 S 195


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 108 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPAS 257
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A+
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHAA 69


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 333 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 494
           + +R++ R  L+    P  +S  PP TPA+ + +        ++P+  R++L++
Sbjct: 79  SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 402 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 500
           PPTT   +    +       +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 378 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 491
           L HC  + P    A  Q KPL S+ + SL KF+   LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 502 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 380
           IVD  NS   +  R  + L ++G L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +3

Query: 291 ASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 470
           A  +  E  + +     R++ +   +  P  + +    PTT    +R  LS++   SL K
Sbjct: 131 AKKAKTEAPVEAANKSLRSRKKTPEIAAPA-NIEPEVAPTTKTPKKRAALSNEEKQSLKK 189

Query: 471 FQRVLL 488
           FQ  +L
Sbjct: 190 FQSAML 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,705,180
Number of Sequences: 5004
Number of extensions: 80071
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)