Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20249
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        141   7e-34
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.48 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          30   1.9  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                30   1.9  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               29   3.4  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   4.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.5  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)                      28   7.8  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.8  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  141 bits (341), Expect = 7e-34
 Identities = 64/85 (75%), Positives = 75/85 (88%)
 Frame = +2

Query: 254 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 433
           LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEK
Sbjct: 57  LEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEK 116

Query: 434 TSFFQALSIPTKISKGTIEIINDVH 508
           TSFFQAL+IPTKI++GTIEIINDVH
Sbjct: 117 TSFFQALAIPTKIARGTIEIINDVH 141



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = +3

Query: 87  QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 251
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNP 55


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 502 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 380
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 300 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 479
           S + TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q 
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619

Query: 480 VLLKSSTMYTL 512
             +  S   T+
Sbjct: 620 TNVPKSDNNTV 630


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +3

Query: 42  EDKATWKSNYFVKIIQLLD-EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 218
           E K+ +K    V    +L+ E P+    G   +  +     R S R   + L  + + +R
Sbjct: 669 EKKSDFKDKEQVPADPVLEQERPRMISSGVRRLNGKLTAAKRRSRRRKHVDLEAEVSGLR 728

Query: 219 KAIKDHLDNNP---ASRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQ 362
           + ++++ D +     +RN   TSRA +++C    T  +S +N    K+R Q
Sbjct: 729 QEVEENADESAFGKTTRNVRLTSRACISNCKTVATCRQSASNS-ANKTRKQ 778


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +3

Query: 153 QQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--SRNCCHTSRATLASCSPAETSLRS 326
           +++ I+  GS ++  G   +  K       NNPA  S      S AT  + SP  +S   
Sbjct: 195 ERLGIATGGSKLLETGNKLVEEK------QNNPAETSDGAASPSPATQTTSSPTNSSTSV 248

Query: 327 VTNCWRTK--SRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPS 461
                 T   +  QL+P P P  +++ PP + A+V     ++ + PS
Sbjct: 249 QVQPLETSKDNAKQLMPPPPPPPRATPPPVSIATVAITTAAAPVLPS 295


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 408 WAGMTTDNGAMAPGRAGAWTLFSNSL 331
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 101  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 217
            VPKMFH     RG+ T+A  P + T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 327 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 425
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
          Length = 152

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 156 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPAS 257
           Q+R  L   S +L+G NT+++ A+ D L   P S
Sbjct: 23  QVRPGLTALSTILLGANTVIQAALPDILAKTPDS 56


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 529 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 696
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 697 AALSLAI 717
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 339 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 461
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,238,936
Number of Sequences: 59808
Number of extensions: 631729
Number of successful extensions: 1870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)