Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20249
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 36 0.046
AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical ... 28 6.9
AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical ... 28 6.9
AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical ... 28 6.9
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 6.9
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 28 6.9
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical ... 28 9.1
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 136 bits (330), Expect = 1e-32
Identities = 64/90 (71%), Positives = 74/90 (82%)
Frame = +2
Query: 239 GQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 418
G+ SLEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GAIAP V +P NTG
Sbjct: 70 GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129
Query: 419 LGPEKTSFFQALSIPTKISKGTIEIINDVH 508
+GPEKTSFFQAL IPTKI++GTIEI+NDVH
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEILNDVH 159
Score = 121 bits (292), Expect = 5e-28
Identities = 53/83 (63%), Positives = 70/83 (84%)
Frame = +1
Query: 508 LLKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 687
L+K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+ E+LR +F +GV
Sbjct: 160 LIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGV 219
Query: 688 ANVAALSLAIGYPTIASAPHSIA 756
NVA++SLA+ YPT+AS HS+A
Sbjct: 220 RNVASVSLAVNYPTLASVAHSLA 242
Score = 111 bits (268), Expect = 4e-25
Identities = 45/74 (60%), Positives = 63/74 (85%)
Frame = +3
Query: 33 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 212
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 213 MRKAIKDHLDNNPA 254
+RKA++ HL NP+
Sbjct: 61 IRKALRGHLGKNPS 74
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 35.5 bits (78), Expect = 0.046
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 215 AQSHQRPPGQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 394
A Q+ + L K +KG G +FT EV + E + AR G +A +V
Sbjct: 77 ALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETV 136
Query: 395 VIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEI 493
V+P + + L +PTK+ KG I +
Sbjct: 137 VLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITL 170
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +3
Query: 6 RGPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 185
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 186 IVLMGKNTMMRKAI 227
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical
protein Y66H1B.2c protein.
Length = 950
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 350 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGWIVVQVVFDGFAHHSVFSHEHDTG 180
LC PT GL T Q+C + T + G ++ V DG + ++ ++E + G
Sbjct: 733 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 789
>AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical
protein Y66H1B.2b protein.
Length = 899
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 350 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGWIVVQVVFDGFAHHSVFSHEHDTG 180
LC PT GL T Q+C + T + G ++ V DG + ++ ++E + G
Sbjct: 682 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 738
>AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical
protein Y66H1B.2a protein.
Length = 897
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 350 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGWIVVQVVFDGFAHHSVFSHEHDTG 180
LC PT GL T Q+C + T + G ++ V DG + ++ ++E + G
Sbjct: 680 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 736
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 396 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 286
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 285 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 458
T+ S P ++ T+S + L + VP P + FPP TP + P ++ L
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510
Query: 459 SLPKFQRV 482
L F ++
Sbjct: 511 LLQNFLKL 518
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 249 PASRNCCHTSRATLASCSPAETSLRS---VTNCWR--TKSRLQLVPVPLPHCQSSFPPTT 413
PA + C + S S +++ + ++C+ T + +Q P +P C+ S T
Sbjct: 86 PACQQSCQNQCQSAPSVSQCQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQT 145
Query: 414 PASVQRKP 437
PA+VQ P
Sbjct: 146 PAAVQCVP 153
>AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical
protein C32F10.4 protein.
Length = 316
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 372 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSST 500
VP P S PP + P+SS+ P +P K Q V +SST
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESST 250
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 335 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 484
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,528,987
Number of Sequences: 27780
Number of extensions: 458714
Number of successful extensions: 1536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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