Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20249
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 109 2e-24
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 105 3e-23
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 105 3e-23
At1g58220.1 68414.m06612 myb family transcription factor contain... 31 0.91
At5g04470.1 68418.m00445 expressed protein 29 3.7
At1g66330.2 68414.m07533 senescence-associated family protein si... 29 3.7
At1g66330.1 68414.m07532 senescence-associated family protein si... 29 3.7
At5g13260.1 68418.m01523 expressed protein 28 6.4
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 6.4
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 28 8.5
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At3g50610.1 68416.m05534 hypothetical protein 28 8.5
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 8.5
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 8.5
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 109 bits (262), Expect = 2e-24
Identities = 50/80 (62%), Positives = 64/80 (80%)
Frame = +1
Query: 508 LLKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 687
L+K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF AGV
Sbjct: 163 LIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGV 222
Query: 688 ANVAALSLAIGYPTIASAPH 747
+ + ALSLAI YPT+A+APH
Sbjct: 223 SMITALSLAISYPTVAAAPH 242
Score = 107 bits (256), Expect = 1e-23
Identities = 52/94 (55%), Positives = 68/94 (72%)
Frame = +2
Query: 224 HQRPPGQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 403
H G Q+ L LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 69 HADKTGNQAFLS-LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 127
Query: 404 AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDV 505
NTGL P +TSFFQ L+IPTKI+KGT+EII V
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 161
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 48 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 227
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 228 KDHLD 242
+ H D
Sbjct: 67 RIHAD 71
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 105 bits (253), Expect = 3e-23
Identities = 46/80 (57%), Positives = 64/80 (80%)
Frame = +1
Query: 508 LLKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 687
L+K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G+
Sbjct: 162 LIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGI 221
Query: 688 ANVAALSLAIGYPTIASAPH 747
+ V +L+LA+ YPT+A+APH
Sbjct: 222 SMVTSLALAVSYPTLAAAPH 241
Score = 105 bits (252), Expect = 3e-23
Identities = 51/94 (54%), Positives = 67/94 (71%)
Frame = +2
Query: 224 HQRPPGQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 403
H G + L LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 68 HSENSGNTAILN-LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126
Query: 404 AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDV 505
NTGL P +TSFFQ L+IPTKI+KGT+EII V
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 160
Score = 80.2 bits (189), Expect = 2e-15
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +3
Query: 33 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 212
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 213 MRKAIKDHLDNN 248
M+++++ H +N+
Sbjct: 61 MKRSVRIHSENS 72
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 105 bits (253), Expect = 3e-23
Identities = 46/80 (57%), Positives = 64/80 (80%)
Frame = +1
Query: 508 LLKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 687
L+K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G+
Sbjct: 162 LIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGI 221
Query: 688 ANVAALSLAIGYPTIASAPH 747
+ V +L+LA+ YPT+A+APH
Sbjct: 222 SMVTSLALAVSYPTLAAAPH 241
Score = 105 bits (252), Expect = 3e-23
Identities = 51/94 (54%), Positives = 67/94 (71%)
Frame = +2
Query: 224 HQRPPGQQSSLEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 403
H G + L LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 68 HSENTGNTAILN-LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126
Query: 404 AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDV 505
NTGL P +TSFFQ L+IPTKI+KGT+EII V
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 160
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/71 (52%), Positives = 50/71 (70%)
Frame = +3
Query: 33 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 212
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 213 MRKAIKDHLDN 245
M+++++ H +N
Sbjct: 61 MKRSVRIHSEN 71
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 31.1 bits (67), Expect = 0.91
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = -1
Query: 522 TGLQECTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 343
TGLQ + M + + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 342 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRLD 247
+LSR +T P ++ + GNS SR D
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRAD 351
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 375 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 491
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g66330.2 68414.m07533 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 788 DSSDAKSS*TIAMECGAEAIVGYPIAKERAATLATPAWNLARRSSGLMSRIS 633
D+ D KSS ++ EC + V A A A W L G + R++
Sbjct: 314 DAMDGKSSASLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLA 365
>At1g66330.1 68414.m07532 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 788 DSSDAKSS*TIAMECGAEAIVGYPIAKERAATLATPAWNLARRSSGLMSRIS 633
D+ D KSS ++ EC + V A A A W L G + R++
Sbjct: 314 DAMDGKSSASLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLA 365
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 192 ARYWSHVARYGSAASVASPRYRH 124
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 227 QRPPGQQSSLEKLLPHIKGNV---GFVFTRGDLVEVRDKLLENKVQAPARPG 373
QRPP + SL++ PH+ G + T DLVE L V+A PG
Sbjct: 2 QRPPPEDFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPG 53
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +3
Query: 180 SSIVLMGKNTMMRKAIKDHLDNNPASRNCCHTSRATLASCSPAETSLRSVTN-CWRTKSR 356
SSI + K + + DHL+ P+ N R L+ CS ++ L TN W +
Sbjct: 674 SSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNISWLDIGQ 733
Query: 357 LQLVPVPLPHCQSSFPPTTPASVQ-RKPLSSKLFPSLPK 470
+P L Q+ VQ R PL + L P+L +
Sbjct: 734 TADIPSNL-RLQNLDELILCERVQLRTPLMTMLSPTLTR 771
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 393 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 280
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 272 HIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 433
H KGNV + D KLL+ VQ + G+ + P H+ G+G +K
Sbjct: 45 HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 502 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 395
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 502 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 395
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,816,372
Number of Sequences: 28952
Number of extensions: 447939
Number of successful extensions: 1397
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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