Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   3.2  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    27   4.2  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   4.2  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    26   7.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.3  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.6  

>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 221 WFVCGSRYS-IFVPTFLVVSARRHCVALLGLGVVNKYKSPFSH 346
           WF+ G  ++  ++P        ++ V L GL + N + +P SH
Sbjct: 169 WFIAGESFAGQYIPHIAAKLKEKNLVNLGGLAIGNGWINPLSH 211


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 736 CTFLYLYGLLSTYLKKNLKALY 801
           C F+ L G L+ +L KN+K +Y
Sbjct: 144 CVFICLLGYLAKFLGKNVKIVY 165


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 426 DFFSNMC----TDTNIIHMYDQSNTNTAHAACENGLLYLLTT 313
           D   N+C      T+ IH    S+ +    AC+NG  YLL+T
Sbjct: 327 DMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNGYGYLLST 368


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 426 DFFSNMCTDTNIIHMYDQSNTNTAHAACENGLLYLLTTPK 307
           +   N+  D+NI+H+Y ++  +   +   N  L  L  P+
Sbjct: 239 EMIENLTPDSNIVHLYSKTEMSKKFSFITNEFLNQLYGPR 278


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 435 YRHDFFSNMCTDTNIIHMYDQSNTNT 358
           Y HDFFS+  T TNI    +QSN ++
Sbjct: 581 YNHDFFSSSKTPTNI---SEQSNPDS 603


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 805 VNTKPLDFFLNTWRVSRKDIRRYKLVERRATY 710
           +NT    F+L  W  S K  R+++L+   + Y
Sbjct: 48  INTGTFVFYLIPWYFSEKKTRKHRLMSELSMY 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,349
Number of Sequences: 5004
Number of extensions: 65523
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)