Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0984 - 21432119-21432157,21432722-21434068                       29   4.4  
11_06_0382 - 22943583-22943710,22944283-22944397                       28   7.6  

>04_03_0984 - 21432119-21432157,21432722-21434068
          Length = 461

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 394 YYTHVRPEQHEYCPRRMRERTLILIDHAQTQQGDAVPPGGHNEKRRY 254
           Y+  V    HE  P    ER  I  DH   +  DAV    H  +RR+
Sbjct: 369 YFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRH 415


>11_06_0382 - 22943583-22943710,22944283-22944397
          Length = 80

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 314 VVNKYKSPFSHAAWAVFVLLWSYMCIILVSVH 409
           ++ + +SP  HAA  +FV ++ Y C++ V ++
Sbjct: 7   LLGEARSPKQHAAGTIFVNVYGYGCVVNVRLY 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,959
Number of Sequences: 37544
Number of extensions: 391506
Number of successful extensions: 807
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)