Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 42   8e-04
SB_22033| Best HMM Match : ATP-synt_A (HMM E-Value=8.8)                42   8e-04
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)             31   1.1  
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37120| Best HMM Match : EB (HMM E-Value=4.2)                        29   5.9  

>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 35/82 (42%), Positives = 53/82 (64%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNNLQSLCLDTGRIESYNVVVRKILFXXXXXXXXXXXXXX 188
           ++LFPVFTLST+FPII++TL++NL++L    GR   Y  V+ +++F              
Sbjct: 111 LALFPVFTLSTNFPIISVTLRDNLKNLFYREGR--PYPWVIDRLVFPLVAILPPILVAFI 168

Query: 189 XEDISVLIEFTGSYAGAGIQYL 254
            +++  L+  TGSYAGAG+QYL
Sbjct: 169 TQNLEFLVGVTGSYAGAGVQYL 190


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/27 (62%), Positives = 24/27 (88%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNNLQSL 89
           +S +PVFTLS++FP+I ITL+NNL +L
Sbjct: 318 LSFYPVFTLSSNFPLICITLRNNLLTL 344


>SB_22033| Best HMM Match : ATP-synt_A (HMM E-Value=8.8)
          Length = 127

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/27 (62%), Positives = 24/27 (88%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNNLQSL 89
           +S +PVFTLS++FP+I ITL+NNL +L
Sbjct: 60  LSFYPVFTLSSNFPLICITLRNNLLTL 86


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 441 LIYRHDFFSNMCTDTNIIHMYDQS---NTNTAHAACEN 337
           ++Y H + +N+C +T+ +H+Y  +   NT+  HA   N
Sbjct: 1   ILYHHTYHNNICVNTDFLHVYHNNICVNTDFLHAYHNN 38


>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
          Length = 1220

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 315  TPKPSRATQCRLADTTRNVGTNIEYRLPHTNQ*TQSTH*YPLNNTSTIPEELP 157
            T  P++ T  R     R + TN++ R+P T +   ++H  P+  T T+   LP
Sbjct: 1076 TETPAK-TSARPIGGRRGIPTNVQGRVPKTERHDGASHRNPIATTGTLSHSLP 1127


>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 474 VYGIRRKKKTRLIYRHDFFSNMCTDTNIIHMYDQSNTN 361
           VYGI R K+   ++ +  ++N+  ++N  H  ++SN+N
Sbjct: 249 VYGIARGKRKESLHNNALYNNVDNNSNNNHGNNKSNSN 286


>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
          Length = 376

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 386 TCTTRATRILPTPHARTDSYTY*PRPNPAGRRSAAWRTQRETSVQILNTGSRIRTSELNQ 207
           T  T+A     +P ++T ++TY    +P  +  A   T+  TS  +++T +   TS+   
Sbjct: 25  TSITKAHTYTGSPTSKTKAHTY--TESPTSKTKAHTYTESPTSKTVVHTYTGSPTSKTKA 82

Query: 206 HT 201
           HT
Sbjct: 83  HT 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,502,721
Number of Sequences: 59808
Number of extensions: 489091
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)