Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118576-1|AAM49945.1|  509|Drosophila melanogaster LD43196p pro...    90   4e-18
AE014296-3360|AAF51595.2|  509|Drosophila melanogaster CG5262-PA...    90   4e-18
AJ001519-1|CAA04801.1|  513|Drosophila melanogaster Ptx1 homeodo...    29   9.9  

>AY118576-1|AAM49945.1|  509|Drosophila melanogaster LD43196p
           protein.
          Length = 509

 Score = 89.8 bits (213), Expect = 4e-18
 Identities = 44/82 (53%), Positives = 57/82 (69%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNNLQSLCLDTGRIESYNVVVRKILFXXXXXXXXXXXXXX 188
           ++LFP+FTLSTSFPI+AITLKNNLQSL LD  + ESY+V++R + F              
Sbjct: 374 LALFPIFTLSTSFPIVAITLKNNLQSLFLDMSQYESYSVILR-LCFPLLAIIPPFCITYF 432

Query: 189 XEDISVLIEFTGSYAGAGIQYL 254
            E +S L+ FTG+YAG GIQY+
Sbjct: 433 TESLSSLVAFTGTYAGTGIQYI 454



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +2

Query: 233 GSRYSIFVPTFLVVSARRHCVALLGLGVVNKYKSPFSHAAWAVFVLLWSYMCIILVSVHI 412
           G+     +P FLV  ARR C  LLG GVVN++KSPF  +AW VFV +WS +C+ LVS+++
Sbjct: 448 GTGIQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCVCLVSINL 507

Query: 413 F 415
           F
Sbjct: 508 F 508


>AE014296-3360|AAF51595.2|  509|Drosophila melanogaster CG5262-PA
           protein.
          Length = 509

 Score = 89.8 bits (213), Expect = 4e-18
 Identities = 44/82 (53%), Positives = 57/82 (69%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNNLQSLCLDTGRIESYNVVVRKILFXXXXXXXXXXXXXX 188
           ++LFP+FTLSTSFPI+AITLKNNLQSL LD  + ESY+V++R + F              
Sbjct: 374 LALFPIFTLSTSFPIVAITLKNNLQSLFLDMSQYESYSVILR-LCFPLLAIIPPFCITYF 432

Query: 189 XEDISVLIEFTGSYAGAGIQYL 254
            E +S L+ FTG+YAG GIQY+
Sbjct: 433 TESLSSLVAFTGTYAGTGIQYI 454



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +2

Query: 233 GSRYSIFVPTFLVVSARRHCVALLGLGVVNKYKSPFSHAAWAVFVLLWSYMCIILVSVHI 412
           G+     +P FLV  ARR C  LLG GVVN++KSPF  +AW VFV +WS +C+ LVS+++
Sbjct: 448 GTGIQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCVCLVSINL 507

Query: 413 F 415
           F
Sbjct: 508 F 508


>AJ001519-1|CAA04801.1|  513|Drosophila melanogaster Ptx1
           homeodomain protein protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 311 PNPAGRRSAAWRTQRETSVQILNTG 237
           P+  GRRS  WRTQR  ++   +TG
Sbjct: 32  PDQRGRRSGQWRTQRIGAMSAESTG 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,478,734
Number of Sequences: 53049
Number of extensions: 694383
Number of successful extensions: 1605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)