Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   5.2  
Z74473-3|CAA98948.1|  364|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AY008131-1|AAG32084.1|  364|Caenorhabditis elegans heterotrimeri...    28   9.1  

>Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical
           protein C03A3.2 protein.
          Length = 492

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 254 VPTFLVVSARRHCVALLGLGVVNKYKSPFSHAAWAVFVLLWSYMCIILVSVHI 412
           +P  LV +AR+H  ++L   V  K  SPF    W V +  W+   +I+V +++
Sbjct: 435 IPCLLVTAARKHARSVLNFPVPRKNNSPFQSPIWIVLISSWAGFSMIMVLLNL 487



 Score = 35.9 bits (79), Expect = 0.034
 Identities = 14/23 (60%), Positives = 21/23 (91%)
 Frame = +3

Query: 9   VSLFPVFTLSTSFPIIAITLKNN 77
           ++LFP+ TL++S+PIIA+TL NN
Sbjct: 325 LALFPIITLTSSYPIIALTLINN 347


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 379 RPEQHEYCPRRMRERTLILIDHAQTQQGDAVPPGGHNEKRRYKY*IPAPAYEPVNSI 209
           +P+ H+Y P+ +  +  I   H Q   G   PP    +     Y  PAP Y P NSI
Sbjct: 744 QPQPHQYAPQPIHHQQPI---H-QPMHGQQYPPVNQQQPI---YQQPAPQYPPYNSI 793


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 379 RPEQHEYCPRRMRERTLILIDHAQTQQGDAVPPGGHNEKRRYKY*IPAPAYEPVNSI 209
           +P+ H+Y P+ +  +  I   H Q   G   PP    +     Y  PAP Y P NSI
Sbjct: 748 QPQPHQYAPQPIHHQQPI---H-QPMHGQQYPPVNQQQPI---YQQPAPQYPPYNSI 797


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = -2

Query: 429  HDFFSNMCTDTNIIHMYDQSNTNTAHAACENGLLYLLTTPKPSRATQCRLADTTRNVGTN 250
            H F     T T + H + +   +T+         Y   +P PS     R+ +TT      
Sbjct: 5595 HGFVKTTTTTTTVTHEHFEPEDHTSDEHVVESERYASGSPVPSEENSNRVTETTTTTTVT 5654

Query: 249  IEYRLPHTNQ 220
             E+  P  +Q
Sbjct: 5655 REHFEPEDDQ 5664


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = -2

Query: 429  HDFFSNMCTDTNIIHMYDQSNTNTAHAACENGLLYLLTTPKPSRATQCRLADTTRNVGTN 250
            H F     T T + H + +   +T+         Y   +P PS     R+ +TT      
Sbjct: 5595 HGFVKTTTTTTTVTHEHFEPEDHTSDEHVVESERYASGSPVPSEENSNRVTETTTTTTVT 5654

Query: 249  IEYRLPHTNQ 220
             E+  P  +Q
Sbjct: 5655 REHFEPEDDQ 5664


>Z74473-3|CAA98948.1|  364|Caenorhabditis elegans Hypothetical
           protein F56H9.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
 Frame = -2

Query: 564 LNKICLKFIKLTHTR*NITLITYK---------KYIRISVYGIRRKKKTRLIYRH 427
           LNKI L  IK+ HT   + L +YK          YIR     + + KK R IY H
Sbjct: 279 LNKIDLFKIKIKHTNITVALTSYKGPQECDSALDYIRKRFISLNKNKK-RSIYEH 332


>AY008131-1|AAG32084.1|  364|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
 Frame = -2

Query: 564 LNKICLKFIKLTHTR*NITLITYK---------KYIRISVYGIRRKKKTRLIYRH 427
           LNKI L  IK+ HT   + L +YK          YIR     + + KK R IY H
Sbjct: 279 LNKIDLFKIKIKHTNITVALTSYKGPQECDSALDYIRKRFISLNKNKK-RSIYEH 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,691,885
Number of Sequences: 27780
Number of extensions: 372538
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)