Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 15  LFPVFTLSTSFPIIAITLK 71
           + PVFT+ +S+  I +TLK
Sbjct: 75  IVPVFTIVSSYAAIVLTLK 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 227  VCGSRYSIFVPTF 265
            +CGSRY I+V  +
Sbjct: 1428 LCGSRYQIYVTAY 1440


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 340 LACGVGSIRVALVVHVYNISVC 405
           ++CG+G I+  L +  +  +VC
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVC 22


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 149  RRYGSSSGIVDVLFRGY 199
            + YG+ SG+V  L RGY
Sbjct: 1548 KEYGAVSGLVVQLQRGY 1564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,093
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)