Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20247
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24740.1 68418.m02920 expressed protein                             29   3.7  
At1g31490.1 68414.m03855 transferase family protein contains sim...    29   3.7  
At5g63710.1 68418.m07997 leucine-rich repeat transmembrane prote...    28   8.4  

>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/54 (18%), Positives = 28/54 (51%)
 Frame = -2

Query: 411 MCTDTNIIHMYDQSNTNTAHAACENGLLYLLTTPKPSRATQCRLADTTRNVGTN 250
           +C+  N++      +   AH + E  ++   TTP+ + +  C+++ T+  + ++
Sbjct: 760 LCSSGNLLKSSSHGHGMDAHTSDETNIIDYRTTPEAAISLNCKVSQTSYKISSS 813


>At1g31490.1 68414.m03855 transferase family protein contains
           similarity to anthranilate N-hydroxycinnamoyl
           benzoyltransferase GI:3288180, GI:2239091 from (Dianthus
           caryophyllus); contains Pfam profile PF02458 transferase
           family
          Length = 444

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 293 VALLGLGVVNKYKSPFSHAAWAVFVLLWSYMCIILVSVHIFEKKS 427
           V  +G+G +N+  S  +  +W+V  ++W  +   L S  +F+  S
Sbjct: 392 VEKIGVGYLNQRPSACNDGSWSVSAIVWPELATALESDSVFQPMS 436


>At5g63710.1 68418.m07997 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 614

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 383 CTTRATRILPTPHARTDSYTY*PRPNPAGRRSAAWRTQRETS 258
           CTT + RIL  P+    S  Y  R   AG     W T++  +
Sbjct: 353 CTTSSERILVYPYMENLSVAYRLRDLKAGEEGLDWPTRKRVA 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,621
Number of Sequences: 28952
Number of extensions: 327797
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)