Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20245
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    27   3.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.4  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   8.4  

>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 520 ICFQLHTTKIQE---PYGLGVDKLIFTFKMRLLFYAFLVCYKYNFYFFQSCLNFVI 678
           I F L T  +++   P  +     +F+F  R  FYAF+    +++  F S L F++
Sbjct: 41  IVFGLGTIGLEKEIPPIAIKYGSFMFSFLGRGFFYAFMGTLLFSYSGFTSFLGFLV 96


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 479  NFIQFYGMVWQYPKFVSNYILQRFKNPMASELINLYLHLR*DFCFMHFLFATNTIFIF 652
            NF++F G+  Q  K +  ++L           I+  L+L+  FC  +FLF T ++ ++
Sbjct: 1181 NFLKFSGIPTQSKKRLEVHMLN---------FISSTLYLKVSFCSSNFLFKTISVLVY 1229


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 717 KYILLFEIIRAIKNHKI*TGLKKIKIV--FVANKKCIKQKSHLKCKYKF 577
           KYI+L    R IKN+ I T  +  K V  F+ +K  ++  +  K K  F
Sbjct: 228 KYIILDYSFRDIKNNSILTSKESRKAVIDFLTSKTILENMAERKTKICF 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,363
Number of Sequences: 5004
Number of extensions: 48149
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)